Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040311.1-P | Field mustard | nucleus | 99.61 | 99.61 |
| CDY57109 | Canola | plastid | 92.28 | 91.92 |
| CDY18932 | Canola | plastid | 84.56 | 87.25 |
| AT2G45420.1 | Thale cress | plastid | 86.49 | 85.5 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 27.41 | 68.93 |
| VIT_15s0048g00830.t01 | Wine grape | nucleus | 62.16 | 64.14 |
| GSMUA_Achr5P11330_001 | Banana | plastid | 58.3 | 62.66 |
| GSMUA_Achr2P11240_001 | Banana | plastid | 55.6 | 61.02 |
| CDY07236 | Canola | plastid | 51.74 | 59.82 |
| KRH40590 | Soybean | plastid | 53.28 | 59.48 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 51.35 | 59.38 |
| KRH65254 | Soybean | plastid | 57.53 | 59.36 |
| KRH00577 | Soybean | plastid | 53.28 | 58.97 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 50.97 | 58.93 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 57.53 | 57.98 |
| KRH76282 | Soybean | plastid | 55.21 | 57.89 |
| GSMUA_Achr1P02520_001 | Banana | cytosol, nucleus, plastid | 54.05 | 57.85 |
| Zm00001d028413_P001 | Maize | plastid | 57.14 | 56.92 |
| Zm00001d047921_P001 | Maize | plastid | 57.53 | 56.23 |
| Os03t0246900-00 | Rice | nucleus | 59.07 | 55.64 |
| HORVU4Hr1G063160.1 | Barley | plastid | 54.83 | 55.47 |
| TraesCS4D01G225200.1 | Wheat | nucleus | 54.83 | 54.62 |
| EER92557 | Sorghum | nucleus | 57.92 | 54.35 |
| TraesCS4A01G067300.1 | Wheat | nucleus | 55.6 | 54.14 |
| TraesCS4B01G224600.1 | Wheat | plastid | 54.05 | 53.44 |
| Os10t0162600-00 | Rice | nucleus | 52.12 | 50.19 |
| KXG38649 | Sorghum | plastid | 49.03 | 48.85 |
| Zm00001d030364_P001 | Maize | plastid | 45.95 | 48.57 |
| CDY57108 | Canola | mitochondrion | 33.2 | 48.31 |
| CDY37038 | Canola | mitochondrion | 32.43 | 47.19 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 32.82 | 45.21 |
| CDY07237 | Canola | nucleus | 33.59 | 45.08 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 32.05 | 44.15 |
| CDY15375 | Canola | nucleus | 30.5 | 43.89 |
| CDY67746 | Canola | nucleus | 36.68 | 42.79 |
| CDY10793 | Canola | nucleus | 29.34 | 42.22 |
| CDY24760 | Canola | nucleus | 29.34 | 42.22 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 18.92 | 40.83 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 18.15 | 40.17 |
| CDX98901 | Canola | nucleus | 28.19 | 39.89 |
| CDY60434 | Canola | nucleus | 27.8 | 39.34 |
| CDY14832 | Canola | mitochondrion, nucleus | 29.73 | 38.69 |
| CDY28537 | Canola | mitochondrion | 17.76 | 38.02 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 17.76 | 38.02 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 17.76 | 38.02 |
| CDY48982 | Canola | mitochondrion | 17.37 | 37.19 |
| CDX71962 | Canola | plastid | 31.27 | 36.65 |
| CDY64515 | Canola | nucleus, plastid | 34.36 | 36.48 |
| CDY22562 | Canola | nucleus | 33.2 | 36.13 |
| CDX88974 | Canola | mitochondrion, nucleus | 30.5 | 36.07 |
| CDY70198 | Canola | nucleus | 33.98 | 36.07 |
| CDY00547 | Canola | mitochondrion, nucleus | 30.12 | 35.94 |
| GSMUA_Achr4P28810_001 | Banana | nucleus | 40.54 | 35.59 |
| CDY06048 | Canola | plastid | 30.89 | 35.56 |
| CDY14831 | Canola | nucleus | 33.59 | 35.37 |
| CDY47969 | Canola | nucleus | 33.2 | 34.96 |
| CDX74209 | Canola | plastid | 35.91 | 34.07 |
| CDY19098 | Canola | cytosol | 31.27 | 33.89 |
| CDY29956 | Canola | plastid | 35.91 | 33.82 |
| CDX92049 | Canola | plastid | 34.75 | 33.71 |
| CDY00994 | Canola | plastid | 21.24 | 32.16 |
| CDY08551 | Canola | plastid | 21.24 | 31.98 |
| CDY47970 | Canola | nucleus | 29.73 | 29.17 |
Protein Annotations
| EnsemblPlants:CDY68635 | EnsemblPlantsGene:GSBRNA2T00076515001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF3 |
| PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY68635 | ProteinID:CDY68635.1 | SEG:seg | UniParc:UPI0004EE7F0E |
| UniProt:A0A078JQA1 | MapMan:15.5.24 | : | : | : | : |
Description
BnaAnng27870DBnaAnng27870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQA1]
Coordinates
chrLK037700:-:2800..4655
Molecular Weight (calculated)
27121.8 Da
IEP (calculated)
8.079
GRAVY (calculated)
-0.274
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGGNTITP MGGGGCGGRS SGSGGTSGGG GGGPCGACKF LRRKCVPGCI FAPYFDSEQG SAYFAAVHKV FGASNVSKLL LHIPVHRRSD AVVTICYEAQ
101: ARIRDPIYGC VAHIFALQQQ VVNLQAEVSY VQAHLASLEL PDPQTRPPPP PQSQPQSLFF TPPPLSTTDL AASVSPLPST YDLASTFDHA ASPSSWATQQ
201: RRFVDPRHQY GRSLSSSSAT VGLAGGNSDL EALAHELLHR QGSPPPTTTD DSPSRTMSR
101: ARIRDPIYGC VAHIFALQQQ VVNLQAEVSY VQAHLASLEL PDPQTRPPPP PQSQPQSLFF TPPPLSTTDL AASVSPLPST YDLASTFDHA ASPSSWATQQ
201: RRFVDPRHQY GRSLSSSSAT VGLAGGNSDL EALAHELLHR QGSPPPTTTD DSPSRTMSR
001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
Arabidopsis Description
LBD18LBD18 [Source:UniProtKB/TrEMBL;Acc:A0A178VVX7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.