Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7A01G228900.1 | |
| TraesCS7B01G195100.1 | |
| TraesCS7D01G229900.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00220.1 | TraesCS7A01G228900.1 | AT4G00210.1 | 22822207 |
| AT4G00220.1 | TraesCS7B01G195100.1 | AT4G00210.1 | 22822207 |
| AT4G00220.1 | TraesCS7D01G229900.1 | AT4G00210.1 | 22822207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G063160.1 | Barley | plastid | 95.04 | 97.27 |
| TraesCS4D01G225200.1 | Wheat | nucleus | 96.18 | 96.92 |
| TraesCS4A01G067300.1 | Wheat | nucleus | 97.71 | 96.24 |
| Zm00001d047921_P001 | Maize | plastid | 79.39 | 78.49 |
| Zm00001d028413_P001 | Maize | plastid | 76.72 | 77.31 |
| EER92557 | Sorghum | nucleus | 79.39 | 75.36 |
| PGSC0003DMT400033253 | Potato | plastid | 39.69 | 74.82 |
| Os03t0246900-00 | Rice | nucleus | 78.24 | 74.55 |
| VIT_15s0048g00830.t01 | Wine grape | nucleus | 61.45 | 64.14 |
| KRH65254 | Soybean | plastid | 56.49 | 58.96 |
| KRH00577 | Soybean | plastid | 51.91 | 58.12 |
| Bra008514.1-P | Field mustard | cytosol, nucleus, plastid | 49.62 | 58.04 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 49.24 | 57.59 |
| Bra037323.1-P | Field mustard | plastid | 49.24 | 57.59 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 49.24 | 57.59 |
| CDY07236 | Canola | plastid | 49.24 | 57.59 |
| KRH76282 | Soybean | plastid | 54.2 | 57.49 |
| AT4G00220.1 | Thale cress | plastid | 50.0 | 57.46 |
| CDY18932 | Canola | plastid | 54.96 | 57.37 |
| KRH40590 | Soybean | plastid | 50.76 | 57.33 |
| Bra004910.1-P | Field mustard | plastid | 54.96 | 56.92 |
| Solyc01g091420.1.1 | Tomato | plastid | 58.02 | 56.09 |
| AT2G45420.1 | Thale cress | plastid | 55.34 | 55.34 |
| Bra040311.1-P | Field mustard | nucleus | 53.82 | 54.44 |
| CDY57109 | Canola | plastid | 53.82 | 54.23 |
| CDY68635 | Canola | nucleus | 53.44 | 54.05 |
| TraesCS7B01G195100.1 | Wheat | cytosol, nucleus, plastid | 39.31 | 44.98 |
| TraesCS6B01G438700.1 | Wheat | plastid | 33.97 | 42.18 |
| TraesCS4B01G316100.1 | Wheat | plastid | 28.24 | 39.57 |
| GSMUA_Achr4P28810_001 | Banana | nucleus | 41.22 | 36.61 |
| TraesCS4B01G001200.1 | Wheat | nucleus | 32.82 | 35.98 |
| TraesCS6B01G072200.1 | Wheat | nucleus | 32.06 | 35.44 |
| TraesCS4B01G346500.1 | Wheat | cytosol, mitochondrion, nucleus | 20.23 | 31.55 |
| TraesCS4B01G316200.1 | Wheat | nucleus, plastid | 34.35 | 31.25 |
| TraesCS5B01G282700.1 | Wheat | nucleus | 21.76 | 30.0 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G224600.1 | EnsemblPlantsGene:TraesCS4B01G224600 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF3 |
| PFAM:PF03195 | PFscan:PS50891 | SEG:seg | MapMan:15.5.24 | : | : |
Description
No Description!
Coordinates
chr4B:+:470295868..470297445
Molecular Weight (calculated)
27140.4 Da
IEP (calculated)
7.863
GRAVY (calculated)
-0.181
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGGGSSTL GGCGGPSGSG SGSGGVGGGG LGGGGGGPCG ACKFLRRKCV SECIFAPYFD SEQGAAHFAA VHKVFGASNV SKLLLQIPAH KRLDAVVTIC
101: YEAQARLRDP VYGCVAHIFV LQQQVVNLQA ELTYLQTHLA TLELPSPPLP AAPQMPMAMP AQFSISDLPS TTNIPTTIDL SALFEPPAQP QWAVQQHHQH
201: QLRQHPSYGA MAHRGGSSMA EGSAASGSGS GELQTLAREL LDRHGRSGVK PELQPPPPPH PR
101: YEAQARLRDP VYGCVAHIFV LQQQVVNLQA ELTYLQTHLA TLELPSPPLP AAPQMPMAMP AQFSISDLPS TTNIPTTIDL SALFEPPAQP QWAVQQHHQH
201: QLRQHPSYGA MAHRGGSSMA EGSAASGSGS GELQTLAREL LDRHGRSGVK PELQPPPPPH PR
001: MSSSGNPSSS SGGGGGPCGA CKFLRRKCVA GCIFAPYFDS EQGAAHFAAV HKVFGASNVS KLLHHVPEHK RPDAVVSICF EAQARLRDPI YGCVSHIVSL
101: QQQVVSLQTE LSYLQAHLAT LELPQPQPPQ VPVSSSGSLQ ALSITDLPTI SPSVYDLSSI FEPVMSSTWA MQQQPRPSDH LFGVPSSSNM GGGGELQALA
201: REFIHGGQMP AQPSPGTSGS ASSVIKRE
101: QQQVVSLQTE LSYLQAHLAT LELPQPQPPQ VPVSSSGSLQ ALSITDLPTI SPSVYDLSSI FEPVMSSTWA MQQQPRPSDH LFGVPSSSNM GGGGELQALA
201: REFIHGGQMP AQPSPGTSGS ASSVIKRE
Arabidopsis Description
LBD30LOB domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:O81323]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.