Factsheet for TraesCS7D01G229900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G228900.1	Wheat	cytosol, nucleus, plastid	93.01	93.01
TraesCS7B01G195100.1	Wheat	cytosol, nucleus, plastid	90.83	90.83
HORVU7Hr1G046690.1	Barley	cytosol, nucleus, plastid	79.04	79.39
HORVU0Hr1G020290.1	Barley	cytosol, plastid	41.48	76.0
VIT_15s0048g00840.t01	Wine grape	cytosol, nucleus, plastid	38.43	45.36
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	33.19	45.24
Solyc01g091400.2.1	Tomato	plastid	32.75	44.91
AT2G45410.1	Thale cress	cytosol, nucleus, plastid	35.81	42.93
CDY37038	Canola	mitochondrion	33.19	42.7
CDY57108	Canola	mitochondrion	33.19	42.7
CDY68561	Canola	cytosol, nucleus, plastid	34.93	42.55
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	34.5	42.02
CDX74738	Canola	cytosol, nucleus, plastid	34.5	42.02
AT4G00210.1	Thale cress	nucleus	39.74	41.36
KRH76281	Soybean	cytosol, nucleus, plastid	35.37	40.91
TraesCS4D01G225200.1	Wheat	nucleus	45.85	40.38
PGSC0003DMT400033221	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	23.14	39.85
KRH65255	Soybean	cytosol, nucleus, plastid	36.68	39.62
CDY07237	Canola	nucleus	33.19	39.38
CDY67746	Canola	nucleus	36.24	37.39
Bra037322.1-P	Field mustard	nucleus	36.24	37.39
TraesCS4D01G312700.1	Wheat	plastid	29.69	36.36
TraesCS6D01G382600.1	Wheat	plastid	30.57	33.49
TraesCS4D01G001700.1	Wheat	mitochondrion	30.57	32.26
TraesCS4D01G312800.1	Wheat	plastid	37.55	30.07
TraesCS4D01G341500.1	Wheat	cytosol, mitochondrion, nucleus	22.27	29.48
TraesCS3D01G308000.1	Wheat	mitochondrion	29.69	27.64
TraesCS5D01G291300.1	Wheat	nucleus	22.71	27.51
TraesCS1D01G110300.1	Wheat	cytosol, mitochondrion, nucleus	22.27	24.17

Protein Annotations

EnsemblPlants:TraesCS7D01G229900.1	EnsemblPlantsGene:TraesCS7D01G229900	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31529
PANTHER:PTHR31529:SF3	PFAM:PF03195	PFscan:PS50891	SEG:seg	MapMan:15.5.24	:

Description

No Description!

Coordinates

chr7D:+:190447108..190448500

Molecular Weight (calculated)

24502.7 Da

IEP (calculated)

6.657

GRAVY (calculated)

-0.358

Length

229 amino acids

Sequence
(BLAST)

001: MSGSSTSAGV SIGGRPGGSS GGPCGACKFL RRKCADDCIF APYFGSEQGV EHFTAVHKVF GASNVSKILN QAPPHKRFDA AITVCYEAKA RLRDPIYGCV
101: GDIFALQQRV ANLQAEVASL QAHLTTLQQP SPPPFPSLSY MPMTTEFSIS ELASLSNVPN TVELSSLFDP SMQWAFQQEH QQPYGQTGEG SSGRGNTNSN
201: GDDLQALARE LLDRRSTGSA PQQPLNTQF

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.