Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040312.1-P | Field mustard | cytosol, nucleus, plastid | 72.25 | 82.14 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 80.1 | 81.38 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 79.06 | 80.32 |
| Bra004908.1-P | Field mustard | cytosol, nucleus, plastid | 79.06 | 80.32 |
| CDY37038 | Canola | mitochondrion | 72.25 | 77.53 |
| CDY57108 | Canola | mitochondrion | 71.73 | 76.97 |
| VIT_15s0048g00840.t01 | Wine grape | cytosol, nucleus, plastid | 60.73 | 59.79 |
| KRH76281 | Soybean | cytosol, nucleus, plastid | 56.02 | 54.04 |
| KRH65255 | Soybean | cytosol, nucleus, plastid | 57.59 | 51.89 |
| HORVU0Hr1G020290.1 | Barley | cytosol, plastid | 33.51 | 51.2 |
| Solyc01g091400.2.1 | Tomato | plastid | 43.46 | 49.7 |
| PGSC0003DMT400033221 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 32.98 | 47.37 |
| AT3G26660.1 | Thale cress | mitochondrion | 28.27 | 44.63 |
| AT3G26620.1 | Thale cress | mitochondrion | 27.75 | 43.8 |
| AT4G00210.1 | Thale cress | nucleus | 49.74 | 43.18 |
| AT4G00220.1 | Thale cress | plastid | 46.07 | 38.6 |
| AT2G31310.1 | Thale cress | nucleus | 37.17 | 37.77 |
| TraesCS7A01G228900.1 | Wheat | cytosol, nucleus, plastid | 43.98 | 36.68 |
| AT2G45420.1 | Thale cress | plastid | 49.74 | 36.26 |
| AT5G06080.1 | Thale cress | mitochondrion, nucleus | 33.51 | 36.16 |
| HORVU7Hr1G046690.1 | Barley | cytosol, nucleus, plastid | 42.93 | 35.96 |
| TraesCS7D01G229900.1 | Wheat | cytosol, nucleus, plastid | 42.93 | 35.81 |
| TraesCS7B01G195100.1 | Wheat | cytosol, nucleus, plastid | 41.88 | 34.93 |
| AT3G58190.1 | Thale cress | plastid | 38.22 | 33.49 |
| AT3G11090.1 | Thale cress | mitochondrion | 27.75 | 32.12 |
| AT2G42440.1 | Thale cress | mitochondrion, nucleus | 38.22 | 29.92 |
| AT2G42430.1 | Thale cress | plastid | 38.22 | 29.8 |
| AT3G03760.1 | Thale cress | nucleus, plastid | 38.22 | 26.74 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:819149 | UniProt:A0A178VSY1 | ProteinID:AAB82623.1 | EMBL:AB473856 | ProteinID:AEC10549.1 |
| ArrayExpress:AT2G45410 | EnsemblPlantsGene:AT2G45410 | RefSeq:AT2G45410 | TAIR:AT2G45410 | RefSeq:AT2G45410-TAIR-G | EnsemblPlants:AT2G45410.1 |
| TAIR:AT2G45410.1 | ncoils:Coil | GO:GO:0008150 | InterPro:IPR004883 | Symbol:LBD19 | InterPro:LOB |
| RefSeq:NP_182065.1 | UniProt:O22132 | ProteinID:OAP08265.1 | PFAM:PF03195 | PFscan:PS50891 | PANTHER:PTHR31529 |
| PANTHER:PTHR31529:SF7 | UniParc:UPI00000A3F96 | SEG:seg | : | : | : |
Description
LBD19LBD19 [Source:UniProtKB/TrEMBL;Acc:A0A178VSY1]
Coordinates
chr2:-:18712220..18713211
Molecular Weight (calculated)
20981.2 Da
IEP (calculated)
7.856
GRAVY (calculated)
-0.236
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTGNLNGGG RGGEGPCGAC KFLRRKCVKG CVFAPYFDAE QGTARFAAVH KVFGASNASK MLLRLPLHKR LDAVVTLCYE AMARIRDPVY GSVGHLFSLQ
101: HQVMNLQAEL AHVQARLSTI QRFPLQSPQQ MQPPSFDPAH NNEYAMEPSN LDSVWGEEHL LQDGTGDGDF QELASQFVSR YLPAVKLPAC T
101: HQVMNLQAEL AHVQARLSTI QRFPLQSPQQ MQPPSFDPAH NNEYAMEPSN LDSVWGEEHL LQDGTGDGDF QELASQFVSR YLPAVKLPAC T
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.