Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004908.1-P | Field mustard | cytosol, nucleus, plastid | 100.0 | 100.0 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 94.15 | 94.15 |
| AT2G45410.1 | Thale cress | cytosol, nucleus, plastid | 80.32 | 79.06 |
| CDY57108 | Canola | mitochondrion | 73.4 | 77.53 |
| CDY37038 | Canola | mitochondrion | 72.34 | 76.4 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 33.51 | 61.16 |
| VIT_15s0048g00840.t01 | Wine grape | cytosol, nucleus, plastid | 56.38 | 54.64 |
| HORVU0Hr1G020290.1 | Barley | cytosol, plastid | 32.45 | 48.8 |
| Solyc01g091400.2.1 | Tomato | plastid | 43.09 | 48.5 |
| KRH76281 | Soybean | cytosol, nucleus, plastid | 51.06 | 48.48 |
| KRH65255 | Soybean | cytosol, nucleus, plastid | 53.19 | 47.17 |
| PGSC0003DMT400033221 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 31.38 | 44.36 |
| CDY07237 | Canola | nucleus | 45.21 | 44.04 |
| CDY67746 | Canola | nucleus | 50.0 | 42.34 |
| CDY28537 | Canola | mitochondrion | 27.13 | 42.15 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 26.6 | 41.67 |
| CDY48982 | Canola | mitochondrion | 26.6 | 41.32 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 25.53 | 41.03 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 26.06 | 40.5 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 26.06 | 40.5 |
| CDX98901 | Canola | nucleus | 36.17 | 37.16 |
| CDY60434 | Canola | nucleus | 36.17 | 37.16 |
| CDY07236 | Canola | plastid | 44.15 | 37.05 |
| CDY10793 | Canola | nucleus | 35.11 | 36.67 |
| CDY15375 | Canola | nucleus | 34.57 | 36.11 |
| CDY24760 | Canola | nucleus | 34.57 | 36.11 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 42.55 | 35.71 |
| CDY14832 | Canola | mitochondrion, nucleus | 37.77 | 35.68 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 42.02 | 35.27 |
| TraesCS7A01G228900.1 | Wheat | cytosol, nucleus, plastid | 42.55 | 34.93 |
| HORVU7Hr1G046690.1 | Barley | cytosol, nucleus, plastid | 42.02 | 34.65 |
| TraesCS7D01G229900.1 | Wheat | cytosol, nucleus, plastid | 42.02 | 34.5 |
| TraesCS7B01G195100.1 | Wheat | cytosol, nucleus, plastid | 41.49 | 34.06 |
| CDY18932 | Canola | plastid | 44.15 | 33.07 |
| CDX88974 | Canola | mitochondrion, nucleus | 37.77 | 32.42 |
| CDY57109 | Canola | plastid | 44.68 | 32.31 |
| CDY00547 | Canola | mitochondrion, nucleus | 37.23 | 32.26 |
| CDY00994 | Canola | plastid | 29.26 | 32.16 |
| CDY68635 | Canola | nucleus | 44.15 | 32.05 |
| CDY08551 | Canola | plastid | 29.26 | 31.98 |
| CDX71962 | Canola | plastid | 37.23 | 31.67 |
| CDY06048 | Canola | plastid | 37.23 | 31.11 |
| CDY22562 | Canola | nucleus | 39.36 | 31.09 |
| CDY64515 | Canola | nucleus, plastid | 39.89 | 30.74 |
| CDY47969 | Canola | nucleus | 39.89 | 30.49 |
| CDY14831 | Canola | nucleus | 39.89 | 30.49 |
| CDY70198 | Canola | nucleus | 39.36 | 30.33 |
| CDY19098 | Canola | cytosol | 36.7 | 28.87 |
| CDY47970 | Canola | nucleus | 38.3 | 27.27 |
| CDX92049 | Canola | plastid | 38.3 | 26.97 |
| CDX74209 | Canola | plastid | 38.83 | 26.74 |
| CDY29956 | Canola | plastid | 38.83 | 26.55 |
Protein Annotations
| EnsemblPlants:CDX74738 | EnsemblPlantsGene:GSBRNA2T00116705001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31529 |
| PANTHER:PTHR31529:SF7 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDX74738 | ProteinID:CDX74738.1 | SEG:seg |
| UniParc:UPI0002547F1D | MapMan:15.5.24 | : | : | : | : |
Description
BnaA05g04840D
Coordinates
chrLK031802:-:386275..386932
Molecular Weight (calculated)
20739.8 Da
IEP (calculated)
6.771
GRAVY (calculated)
-0.256
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGNLNGGGR GGEGPCGACK FLRRKCVSGC VFAPYFDAEQ GTATFAAVHK VFGASNASKM LLRLPLNKRH EAVSTLCYEA LARLRDPVYG SVGHLLSLQH
101: QVMNLQAEIA HVQARLSAFQ RVSIIPPQQM QQPPHNNEYP VEQTNLDFVW EEEQLPQAGN EDGEFQELAM QFVSKYLTEV KLPACTFG
101: QVMNLQAEIA HVQARLSAFQ RVSIIPPQQM QQPPHNNEYP VEQTNLDFVW EEEQLPQAGN EDGEFQELAM QFVSKYLTEV KLPACTFG
001: MMTGNLNGGG RGGEGPCGAC KFLRRKCVKG CVFAPYFDAE QGTARFAAVH KVFGASNASK MLLRLPLHKR LDAVVTLCYE AMARIRDPVY GSVGHLFSLQ
101: HQVMNLQAEL AHVQARLSTI QRFPLQSPQQ MQPPSFDPAH NNEYAMEPSN LDSVWGEEHL LQDGTGDGDF QELASQFVSR YLPAVKLPAC T
101: HQVMNLQAEL AHVQARLSTI QRFPLQSPQQ MQPPSFDPAH NNEYAMEPSN LDSVWGEEHL LQDGTGDGDF QELASQFVSR YLPAVKLPAC T
Arabidopsis Description
LBD19LBD19 [Source:UniProtKB/TrEMBL;Acc:A0A178VSY1]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.