Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10793 | Canola | nucleus | 95.56 | 95.56 |
| Bra018260.1-P | Field mustard | nucleus | 95.56 | 89.12 |
| CDY15375 | Canola | nucleus | 86.11 | 86.11 |
| AT2G31310.1 | Thale cress | nucleus | 81.67 | 78.19 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 38.33 | 66.99 |
| CDY19098 | Canola | cytosol | 81.67 | 61.51 |
| CDY14832 | Canola | mitochondrion, nucleus | 46.67 | 42.21 |
| CDX88974 | Canola | mitochondrion, nucleus | 48.33 | 39.73 |
| CDY00547 | Canola | mitochondrion, nucleus | 47.78 | 39.63 |
| CDX71962 | Canola | plastid | 47.78 | 38.91 |
| CDY06048 | Canola | plastid | 47.78 | 38.22 |
| CDY60434 | Canola | nucleus | 38.33 | 37.7 |
| CDY57108 | Canola | mitochondrion | 37.22 | 37.64 |
| CDY37038 | Canola | mitochondrion | 37.22 | 37.64 |
| CDX98901 | Canola | nucleus | 37.78 | 37.16 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 23.89 | 36.75 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 24.44 | 36.67 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 24.44 | 36.36 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 36.67 | 35.11 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 23.33 | 34.71 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 36.11 | 34.57 |
| CDY07237 | Canola | nucleus | 36.67 | 34.2 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 42.22 | 33.93 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 42.22 | 33.93 |
| CDY28537 | Canola | mitochondrion | 22.78 | 33.88 |
| CDY07236 | Canola | plastid | 41.67 | 33.48 |
| CDY14831 | Canola | nucleus | 45.56 | 33.33 |
| CDY48982 | Canola | mitochondrion | 22.22 | 33.06 |
| CDY64515 | Canola | nucleus, plastid | 44.44 | 32.79 |
| CDY70198 | Canola | nucleus | 44.44 | 32.79 |
| CDY47969 | Canola | nucleus | 44.44 | 32.52 |
| CDY22562 | Canola | nucleus | 42.78 | 32.35 |
| CDY47970 | Canola | nucleus | 47.22 | 32.2 |
| CDY67746 | Canola | nucleus | 37.78 | 30.63 |
| CDY18932 | Canola | plastid | 42.22 | 30.28 |
| CDY00994 | Canola | plastid | 28.33 | 29.82 |
| CDY08551 | Canola | plastid | 28.33 | 29.65 |
| CDY68635 | Canola | nucleus | 42.22 | 29.34 |
| CDY57109 | Canola | plastid | 42.22 | 29.23 |
| CDY29956 | Canola | plastid | 41.67 | 27.27 |
| CDX92049 | Canola | plastid | 40.0 | 26.97 |
| CDX74209 | Canola | plastid | 40.56 | 26.74 |
Protein Annotations
| EnsemblPlants:CDY24760 | EnsemblPlantsGene:GSBRNA2T00027191001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF2 |
| PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY24760 | ProteinID:CDY24760.1 | SEG:seg | UniParc:UPI0004EAC1C5 |
| UniProt:A0A078GDX9 | MapMan:15.5.24 | : | : | : | : |
Description
BnaC04g13650DBnaC04g13650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDX9]
Coordinates
chrLK032163:+:452971..453626
Molecular Weight (calculated)
20119.8 Da
IEP (calculated)
5.191
GRAVY (calculated)
-0.208
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSANFGAI HKVFGASNFS KLISNLPVHD RCEAVRTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ
101: VVLLREQASR KFPQEDCMEQ GKVLAQDMPQ DLHSWFNHVV SDSNLNQMSD VASTSMDCNE SFCSSNESLY YPESMFPWSV
101: VVLLREQASR KFPQEDCMEQ GKVLAQDMPQ DLHSWFNHVV SDSNLNQMSD VASTSMDCNE SFCSSNESLY YPESMFPWSV
001: MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDHD RCDAVRTISY EAHSRLHDPI YGCVSQIFSL QQQVVSLQAQ
101: VVLLREEASR RFPQDDPGCN MKQQEKVLAQ QMPQDLHNWF HQGILDSDFD PMSGTTRDNE RSMDHNESPC SSNESLNYYQ EVNFPWSV
101: VVLLREEASR RFPQDDPGCN MKQQEKVLAQ QMPQDLHNWF HQGILDSDFD PMSGTTRDNE RSMDHNESPC SSNESLNYYQ EVNFPWSV
Arabidopsis Description
LBD14LOB domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.