CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24760	Canola	nucleus	95.56	95.56
Bra018260.1-P	Field mustard	nucleus	100.0	93.26
CDY15375	Canola	nucleus	86.67	86.67
AT2G31310.1	Thale cress	nucleus	82.22	78.72
CDY35378	Canola	cytosol, nucleus, plastid	38.33	66.99
CDY19098	Canola	cytosol	81.11	61.09
CDY14832	Canola	mitochondrion, nucleus	46.67	42.21
CDX88974	Canola	mitochondrion, nucleus	48.33	39.73
CDY00547	Canola	mitochondrion, nucleus	47.78	39.63
CDX71962	Canola	plastid	47.78	38.91
CDY60434	Canola	nucleus	38.89	38.25
CDY06048	Canola	plastid	47.78	38.22
CDY37038	Canola	mitochondrion	37.78	38.2
CDY57108	Canola	mitochondrion	37.78	38.2
CDX98901	Canola	nucleus	38.33	37.7
CDX83633	Canola	cytosol, mitochondrion, nucleus, plastid	24.44	37.61
CDX75748	Canola	cytosol, mitochondrion, nucleus	25.0	37.5
CDX82498	Canola	cytosol, nucleus, plastid	25.0	37.19
CDY68561	Canola	cytosol, nucleus, plastid	37.22	35.64
CDY13647	Canola	cytosol, mitochondrion, nucleus, plastid	23.89	35.54
CDX74738	Canola	cytosol, nucleus, plastid	36.67	35.11
CDY28537	Canola	mitochondrion	23.33	34.71
CDY69735	Canola	cytosol, nucleus, plastid	42.78	34.38
CDY54923	Canola	cytosol, nucleus, plastid	42.78	34.38
CDY07237	Canola	nucleus	36.67	34.2
CDY07236	Canola	plastid	42.22	33.93
CDY48982	Canola	mitochondrion	22.78	33.88
CDY14831	Canola	nucleus	45.56	33.33
CDY64515	Canola	nucleus, plastid	44.44	32.79
CDY70198	Canola	nucleus	44.44	32.79
CDY47969	Canola	nucleus	44.44	32.52
CDY22562	Canola	nucleus	42.78	32.35
CDY47970	Canola	nucleus	47.22	32.2
CDY67746	Canola	nucleus	37.78	30.63
CDY00994	Canola	plastid	28.89	30.41
CDY18932	Canola	plastid	42.22	30.28
CDY08551	Canola	plastid	28.89	30.23
CDY68635	Canola	nucleus	42.22	29.34
CDY57109	Canola	plastid	42.22	29.23
CDX92049	Canola	plastid	39.44	26.59
CDY29956	Canola	plastid	40.56	26.55
CDX74209	Canola	plastid	40.0	26.37

Protein Annotations

EnsemblPlants:CDY10793	EnsemblPlantsGene:GSBRNA2T00048632001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529	PANTHER:PTHR31529:SF2
PFAM:PF03195	PFscan:PS50891	ProteinID:CDY10793	ProteinID:CDY10793.1	SEG:seg	UniParc:UPI0004EDB605
UniProt:A0A078FFC4	MapMan:15.5.24	:	:	:	:

Description

BnaA05g11430DBnaA05g11430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFC4]

Coordinates

chrLK032006:+:768832..769515

Molecular Weight (calculated)

20198.9 Da

IEP (calculated)

5.571

GRAVY (calculated)

-0.216

Length

180 amino acids

Sequence
(BLAST)

001: MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSANFGAI HKVFGASNFS KLISNLPVHD RCEAVRTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ
101: VVLLREQASR KFPQEDCMEQ GKVVAQDMPQ DLHNWFHQVV SDSNLNQMSD VASTTMDRNE SFCSSSESLY YPEVMFPWSV

Best Arabidopsis Sequence Match ( AT2G31310.1 )
(BLAST)

001: MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDHD RCDAVRTISY EAHSRLHDPI YGCVSQIFSL QQQVVSLQAQ
101: VVLLREEASR RFPQDDPGCN MKQQEKVLAQ QMPQDLHNWF HQGILDSDFD PMSGTTRDNE RSMDHNESPC SSNESLNYYQ EVNFPWSV

Arabidopsis Description

LBD14LOB domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.