Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 97.44 | 94.21 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 91.45 | 89.17 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 90.6 | 87.6 |
| CDY28537 | Canola | mitochondrion | 85.47 | 82.64 |
| AT3G26660.1 | Thale cress | mitochondrion | 84.62 | 81.82 |
| AT3G26620.1 | Thale cress | mitochondrion | 84.62 | 81.82 |
| CDY48982 | Canola | mitochondrion | 83.76 | 80.99 |
| Bra025217.1-P | Field mustard | cytosol | 66.67 | 72.9 |
| Solyc01g109240.1.1 | Tomato | mitochondrion | 51.28 | 49.59 |
| VIT_16s0100g00440.t01 | Wine grape | mitochondrion | 60.68 | 46.41 |
| KRH14351 | Soybean | mitochondrion | 55.56 | 45.45 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 38.46 | 43.69 |
| Solyc06g064540.1.1 | Tomato | mitochondrion, plastid | 53.85 | 42.57 |
| KRH59547 | Soybean | mitochondrion, nucleus, plastid | 51.28 | 41.96 |
| GSMUA_Achr11P... | Banana | mitochondrion | 52.99 | 39.49 |
| TraesCS4B01G346500.1 | Wheat | cytosol, mitochondrion, nucleus | 54.7 | 38.1 |
| TraesCS4D01G341500.1 | Wheat | cytosol, mitochondrion, nucleus | 55.56 | 37.57 |
| Zm00001d034384_P001 | Maize | plastid | 52.14 | 37.2 |
| TraesCS5A01G515300.1 | Wheat | cytosol | 56.41 | 36.87 |
| HORVU4Hr1G084750.2 | Barley | cytosol, nucleus | 53.85 | 35.59 |
| EER93325 | Sorghum | plastid | 53.85 | 35.0 |
| TraesCS5A01G284000.1 | Wheat | nucleus | 52.14 | 32.45 |
| TraesCS5D01G291300.1 | Wheat | nucleus | 52.14 | 32.28 |
| HORVU5Hr1G075950.1 | Barley | cytosol, nucleus | 23.93 | 32.18 |
| TraesCS5B01G282700.1 | Wheat | nucleus | 52.14 | 32.11 |
| Os08t0517100-01 | Rice | cytosol, nucleus, plastid | 23.08 | 28.42 |
| CDY37038 | Canola | mitochondrion | 42.73 | 28.09 |
| CDY57108 | Canola | mitochondrion | 42.73 | 28.09 |
| CDY00994 | Canola | plastid | 41.03 | 28.07 |
| TraesCS1D01G110300.1 | Wheat | cytosol, mitochondrion, nucleus | 50.43 | 27.96 |
| CDY08551 | Canola | plastid | 41.03 | 27.91 |
| OQU80868 | Sorghum | peroxisome | 47.86 | 27.86 |
| Zm00001d031544_P001 | Maize | plastid | 47.86 | 27.18 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 41.03 | 25.53 |
| CDY60434 | Canola | nucleus | 39.32 | 25.14 |
| CDX98901 | Canola | nucleus | 39.32 | 25.14 |
| CDY15375 | Canola | nucleus | 38.46 | 25.0 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 40.17 | 25.0 |
| CDY07237 | Canola | nucleus | 41.03 | 24.87 |
| CDY10793 | Canola | nucleus | 37.61 | 24.44 |
| CDY24760 | Canola | nucleus | 36.75 | 23.89 |
| CDY07236 | Canola | plastid | 43.59 | 22.77 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 41.88 | 21.88 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 41.88 | 21.88 |
| CDY67746 | Canola | nucleus | 41.03 | 21.62 |
| CDY14832 | Canola | mitochondrion, nucleus | 36.75 | 21.61 |
| CDX71962 | Canola | plastid | 40.17 | 21.27 |
| CDY22562 | Canola | nucleus | 42.73 | 21.01 |
| CDY06048 | Canola | plastid | 40.17 | 20.89 |
| CDY00547 | Canola | mitochondrion, nucleus | 38.46 | 20.74 |
| CDX88974 | Canola | mitochondrion, nucleus | 38.46 | 20.55 |
| CDY70198 | Canola | nucleus | 42.73 | 20.49 |
| CDY64515 | Canola | nucleus, plastid | 42.73 | 20.49 |
| CDY14831 | Canola | nucleus | 42.73 | 20.33 |
| CDY47969 | Canola | nucleus | 42.73 | 20.33 |
| CDY19098 | Canola | cytosol | 39.32 | 19.25 |
| CDY18932 | Canola | plastid | 40.17 | 18.73 |
| CDY68635 | Canola | nucleus | 40.17 | 18.15 |
| CDY57109 | Canola | plastid | 38.46 | 17.31 |
| CDX92049 | Canola | plastid | 39.32 | 17.23 |
| CDY47970 | Canola | nucleus | 38.46 | 17.05 |
| CDX74209 | Canola | plastid | 39.32 | 16.85 |
| CDY29956 | Canola | plastid | 39.32 | 16.73 |
Protein Annotations
| EnsemblPlants:CDX83633 | EnsemblPlantsGene:GSBRNA2T00139309001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF13 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDX83633 | ProteinID:CDX83633.1 | UniParc:UPI0004EC5FBE |
| MapMan:15.5.24 | : | : | : | : | : |
Description
BnaC07g23730D
Coordinates
chrLK031833:+:1231457..1231904
Molecular Weight (calculated)
13042.8 Da
IEP (calculated)
8.899
GRAVY (calculated)
-0.307
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPKRCAACK YLRRRCPKDC IFSPYFPPGD PDKFACIHRI YGAGNVSKML QQLPVQTRAE AVESLSFEAK CRVEDPVYGC VGIISLLQTE IQKTQTLLAR
101: TQAEIAVAQA KHSQNPS
101: TQAEIAVAQA KHSQNPS
001: MNPKRCAACK YLRRRCPKDC VFSPYFPPND PQKFACVHRI YGAGNVSKML QQLPDQTRAE AVESLCFEAK CRVDDPVYGC VGIIHLLKTQ IQKTQNELAK
101: TQAEIAVAQT KLSQTHISDF M
101: TQAEIAVAQT KLSQTHISDF M
Arabidopsis Description
LBD23LOB domain-containing protein 23 [Source:UniProtKB/Swiss-Prot;Acc:P59467]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.