Factsheet for TraesCS1D01G110300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G346500.1	Wheat	cytosol, mitochondrion, nucleus	63.03	79.17
TraesCS5A01G515300.1	Wheat	cytosol	65.88	77.65
TraesCS4D01G341500.1	Wheat	cytosol, mitochondrion, nucleus	62.56	76.3
HORVU4Hr1G084750.2	Barley	cytosol, nucleus	63.98	76.27
TraesCS5D01G291300.1	Wheat	nucleus	52.61	58.73
CDX83633	Canola	cytosol, mitochondrion, nucleus, plastid	27.96	50.43
CDY13647	Canola	cytosol, mitochondrion, nucleus, plastid	28.44	49.59
CDX75748	Canola	cytosol, mitochondrion, nucleus	27.49	48.33
CDX82498	Canola	cytosol, nucleus, plastid	27.49	47.93
AT3G26660.1	Thale cress	mitochondrion	27.01	47.11
AT3G26620.1	Thale cress	mitochondrion	26.54	46.28
CDY28537	Canola	mitochondrion	26.54	46.28
CDY48982	Canola	mitochondrion	26.07	45.45
GSMUA_Achr11P...	Banana	mitochondrion	32.7	43.95
Zm00001d031544_P001	Maize	plastid	42.65	43.69
OQU80868	Sorghum	peroxisome	41.23	43.28
Os08t0517100-01	Rice	cytosol, nucleus, plastid	18.48	41.05
Bra025217.1-P	Field mustard	cytosol	20.38	40.19
Solyc01g109240.1.1	Tomato	mitochondrion	22.75	39.67
KRH14351	Soybean	mitochondrion	26.07	38.46
KRH59547	Soybean	mitochondrion, nucleus, plastid	25.12	37.06
VIT_16s0100g00440.t01	Wine grape	mitochondrion	26.54	36.6
Solyc06g064540.1.1	Tomato	mitochondrion, plastid	24.17	34.46
TraesCS6D01G382600.1	Wheat	plastid	26.54	26.79
TraesCS4D01G312700.1	Wheat	plastid	23.22	26.2
TraesCS4D01G001700.1	Wheat	mitochondrion	24.17	23.5
TraesCS7D01G229900.1	Wheat	cytosol, nucleus, plastid	24.17	22.27
TraesCS3D01G308000.1	Wheat	mitochondrion	25.59	21.95
TraesCS4D01G225200.1	Wheat	nucleus	26.54	21.54
TraesCS4D01G312800.1	Wheat	plastid	26.07	19.23
Bra032938.1-P	Field mustard	nucleus	24.64	17.69

Protein Annotations

EnsemblPlants:TraesCS1D01G110300.1	EnsemblPlantsGene:TraesCS1D01G110300	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF56	PFAM:PF03195	PFscan:PS50891	SEG:seg	MapMan:15.5.24	:

Description

No Description!

Coordinates

chr1D:+:104097628..104098372

Molecular Weight (calculated)

22607.9 Da

IEP (calculated)

8.382

GRAVY (calculated)

-0.502

Length

211 amino acids

Sequence
(BLAST)

001: MHEEDQGGGS NRGRCAACKY LRRQCAPDCV LTPYFLASQP HRYAAVLRVF GASKVARFLE SLPVDERAQA AETMAMEAQW RVEDPVYGCA GIISQLQEEI
101: QPTQCELART RAQLAIVPVH GAQLQGSTAA LPPPQPQRDE GHRVPVAQMQ GQGQGKAVSL LDPDDGHRVA VAQMQGQGEA VSLLDRPGRR PSRPRRAKAG
201: AGRGGDVAGP G

Best Arabidopsis Sequence Match ( AT3G26660.1 )
(BLAST)

001: MNPKRCAACK YLRRRCPKDC VFSPYFPPND PQKFACVHRI YGAGNVSKML QQLPDQTRAE AVESLCFEAK CRVDDPVYGC VGIIHLLKTQ IQKTQNELAK
101: TQAEIAVAQT KLSQTQNSDF M

Arabidopsis Description

LBD24LOB domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:P59468]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.