Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G341500.1 | Wheat | cytosol, mitochondrion, nucleus | 87.01 | 89.02 |
| TraesCS4B01G346500.1 | Wheat | cytosol, mitochondrion, nucleus | 82.49 | 86.9 |
| TraesCS5A01G515300.1 | Wheat | cytosol | 87.01 | 86.03 |
| TraesCS1D01G110300.1 | Wheat | cytosol, mitochondrion, nucleus | 76.27 | 63.98 |
| HORVU5Hr1G075950.1 | Barley | cytosol, nucleus | 28.81 | 58.62 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 35.59 | 53.85 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 36.16 | 52.89 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 35.03 | 51.24 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 33.9 | 50.0 |
| CDY28537 | Canola | mitochondrion | 33.9 | 49.59 |
| AT3G26660.1 | Thale cress | mitochondrion | 33.9 | 49.59 |
| CDY48982 | Canola | mitochondrion | 33.33 | 48.76 |
| AT3G26620.1 | Thale cress | mitochondrion | 33.33 | 48.76 |
| Os08t0517100-01 | Rice | cytosol, nucleus, plastid | 25.99 | 48.42 |
| GSMUA_Achr11P... | Banana | mitochondrion | 42.37 | 47.77 |
| OQU80868 | Sorghum | peroxisome | 53.67 | 47.26 |
| Zm00001d031544_P001 | Maize | plastid | 53.11 | 45.63 |
| Solyc01g109240.1.1 | Tomato | mitochondrion | 28.25 | 41.32 |
| Bra025217.1-P | Field mustard | cytosol | 24.86 | 41.12 |
| VIT_16s0100g00440.t01 | Wine grape | mitochondrion | 33.9 | 39.22 |
| KRH14351 | Soybean | mitochondrion | 31.64 | 39.16 |
| KRH59547 | Soybean | mitochondrion, nucleus, plastid | 31.07 | 38.46 |
| Solyc06g064540.1.1 | Tomato | mitochondrion, plastid | 31.07 | 37.16 |
| HORVU0Hr1G020290.1 | Barley | cytosol, plastid | 25.42 | 36.0 |
| HORVU4Hr1G080150.1 | Barley | plastid | 29.38 | 28.26 |
| HORVU0Hr1G017670.2 | Barley | plastid | 31.64 | 26.67 |
| HORVU3Hr1G075370.2 | Barley | nucleus | 33.33 | 25.32 |
| HORVU4Hr1G000880.4 | Barley | cytosol, nucleus, plastid | 27.68 | 21.78 |
| HORVU7Hr1G046690.1 | Barley | cytosol, nucleus, plastid | 27.68 | 21.49 |
| HORVU4Hr1G063160.1 | Barley | plastid | 28.81 | 19.92 |
| Bra032938.1-P | Field mustard | nucleus | 31.64 | 19.05 |
| HORVU4Hr1G080160.1 | Barley | plastid | 29.94 | 18.66 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G084750.2 | EnsemblPlantsGene:HORVU4Hr1G084750 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF56 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI000B4799A7 | UniProt:A0A287PYM5 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:629644074..629644737
Molecular Weight (calculated)
19597.1 Da
IEP (calculated)
5.536
GRAVY (calculated)
-0.437
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: VEAEMHEEDH EADGSNPRRC AACKYLRRRC AHDCVLAPYF PASHPHRYAS VHRVFGASNV ARLLQSLPVD ERAQAAETMA MEARWRVEDP VYGCSGVISQ
101: LQEEILATQC ELARTRAQLA IVLAHGARLQ GSTVALPPPQ PQPERDDGHR VPVAQRQAQG EAVPLLDPDE FLDLDGF
101: LQEEILATQC ELARTRAQLA IVLAHGARLQ GSTVALPPPQ PQPERDDGHR VPVAQRQAQG EAVPLLDPDE FLDLDGF
001: MNPKRCAACK YLRRRCPKDC VFSPYFPPND PQKFACVHRI YGAGNVSKML QQLPDQTRAE AVESLCFEAK CRVDDPVYGC VGIIHLLKTQ IQKTQNELAK
101: TQAEIAVAQT KLSQTQNSDF M
101: TQAEIAVAQT KLSQTQNSDF M
Arabidopsis Description
LBD24LOB domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:P59468]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.