Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 79.44 | 70.25 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 72.9 | 66.67 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 71.96 | 63.64 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 70.09 | 62.5 |
| AT3G26660.1 | Thale cress | mitochondrion | 66.36 | 58.68 |
| AT3G26620.1 | Thale cress | mitochondrion | 65.42 | 57.85 |
| Solyc01g109240.1.1 | Tomato | mitochondrion | 37.38 | 33.06 |
| VIT_16s0100g00440.t01 | Wine grape | mitochondrion | 43.93 | 30.72 |
| KRH59547 | Soybean | mitochondrion, nucleus, plastid | 39.25 | 29.37 |
| KRH14351 | Soybean | mitochondrion | 39.25 | 29.37 |
| Zm00001d034384_P001 | Maize | plastid | 42.99 | 28.05 |
| Solyc06g064540.1.1 | Tomato | mitochondrion, plastid | 37.38 | 27.03 |
| TraesCS4B01G346500.1 | Wheat | cytosol, mitochondrion, nucleus | 42.06 | 26.79 |
| TraesCS5A01G515300.1 | Wheat | cytosol | 43.93 | 26.26 |
| TraesCS4D01G341500.1 | Wheat | cytosol, mitochondrion, nucleus | 42.06 | 26.01 |
| EER93325 | Sorghum | plastid | 42.99 | 25.56 |
| GSMUA_Achr11P... | Banana | mitochondrion | 37.38 | 25.48 |
| Bra032938.1-P | Field mustard | nucleus | 69.16 | 25.17 |
| HORVU4Hr1G084750.2 | Barley | cytosol, nucleus | 41.12 | 24.86 |
| TraesCS5D01G291300.1 | Wheat | nucleus | 41.12 | 23.28 |
| Bra040312.1-P | Field mustard | cytosol, nucleus, plastid | 36.45 | 23.21 |
| TraesCS5A01G284000.1 | Wheat | nucleus | 40.19 | 22.87 |
| TraesCS5B01G282700.1 | Wheat | nucleus | 40.19 | 22.63 |
| TraesCS1D01G110300.1 | Wheat | cytosol, mitochondrion, nucleus | 40.19 | 20.38 |
| Bra004908.1-P | Field mustard | cytosol, nucleus, plastid | 35.51 | 20.21 |
| Bra034867.1-P | Field mustard | plastid | 31.78 | 19.77 |
| Bra009161.1-P | Field mustard | nucleus | 31.78 | 18.58 |
| Zm00001d031544_P001 | Maize | plastid | 35.51 | 18.45 |
| OQU80868 | Sorghum | peroxisome | 34.58 | 18.41 |
| Bra001087.1-P | Field mustard | plastid | 20.56 | 18.33 |
| Bra037323.1-P | Field mustard | plastid | 36.45 | 17.41 |
| Bra037322.1-P | Field mustard | nucleus | 35.51 | 17.12 |
| Bra018260.1-P | Field mustard | nucleus | 30.84 | 17.1 |
| Bra008514.1-P | Field mustard | cytosol, nucleus, plastid | 34.58 | 16.52 |
| Bra000257.1-P | Field mustard | nucleus | 34.58 | 15.55 |
| Bra014581.1-P | Field mustard | mitochondrion, nucleus | 31.78 | 15.53 |
| Bra004693.1-P | Field mustard | plastid | 34.58 | 15.16 |
| Bra016877.1-P | Field mustard | nucleus | 34.58 | 15.04 |
| Bra007385.1-P | Field mustard | plastid | 30.84 | 14.67 |
| Bra021737.1-P | Field mustard | cytosol | 31.78 | 14.23 |
| Bra036436.1-P | Field mustard | plastid | 34.58 | 13.45 |
| Bra004910.1-P | Field mustard | plastid | 31.78 | 13.44 |
| Bra016876.1-P | Field mustard | nucleus | 32.71 | 13.26 |
| Bra040311.1-P | Field mustard | nucleus | 31.78 | 13.13 |
| HORVU5Hr1G075950.1 | Barley | cytosol, nucleus | 8.41 | 10.34 |
| Os08t0517100-01 | Rice | cytosol, nucleus, plastid | 6.54 | 7.37 |
Protein Annotations
Description
AT3G26620 (E=2e-032) LBD23 | LBD23 (LOB DOMAIN-CONTAINING PROTEIN 23)
Coordinates
chrA06:-:22711432..22712256
Molecular Weight (calculated)
11877.5 Da
IEP (calculated)
7.256
GRAVY (calculated)
-0.079
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLSFNQAIE LSDVKFMQEK KLTGKIYGAG NVSKMLQQLP VQTRAEAVES LSFEAKCRVE DPVYGCVGII SLLQTEIQKT QTLLARTQAE IAVAQAKHSQ
101: TQVNEFM
101: TQVNEFM
001: MNPKRCAACK YLRRRCPKDC VFSPYFPPND PQKFACVHRI YGAGNVSKML QQLPDQTRAE AVESLCFEAK CRVDDPVYGC VGIIHLLKTQ IQKTQNELAK
101: TQAEIAVAQT KLSQTHISDF M
101: TQAEIAVAQT KLSQTHISDF M
Arabidopsis Description
LBD23LOB domain-containing protein 23 [Source:UniProtKB/Swiss-Prot;Acc:P59467]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.