Factsheet for Bra000257.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22562	Canola	nucleus	99.16	99.16
AT2G42430.1	Thale cress	plastid	89.5	86.94
Bra016877.1-P	Field mustard	nucleus	89.08	86.18
Bra004693.1-P	Field mustard	plastid	87.82	85.66
KRH19529	Soybean	plastid	33.61	66.12
VIT_07s0005g03030.t01	Wine grape	plastid	50.0	61.03
KRH32155	Soybean	plastid	51.26	57.28
GSMUA_Achr1P01350_001	Banana	nucleus	47.48	56.22
PGSC0003DMT400025135	Potato	nucleus	50.84	54.75
Solyc09g066260.2.1	Tomato	nucleus	51.26	53.04
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	41.6	51.3
EER95498	Sorghum	cytosol, nucleus, plastid	35.71	50.6
Zm00001d027678_P001	Maize	cytosol, nucleus, plastid	35.29	50.3
PGSC0003DMT400051680	Potato	nucleus	41.18	50.26
Solyc06g083930.1.1	Tomato	nucleus	41.18	50.0
Bra001087.1-P	Field mustard	plastid	24.79	49.17
HORVU4Hr1G080150.1	Barley	plastid	37.4	48.37
Zm00001d051891_P001	Maize	plastid	43.28	47.69
TraesCS6A01G398400.1	Wheat	plastid	41.18	47.57
TraesCS4A01G415300.1	Wheat	plastid	36.97	47.57
Os03t0149000-01	Rice	plastid	36.97	47.57
EES07771	Sorghum	plastid	42.44	46.98
TraesCS6D01G382600.1	Wheat	plastid	41.18	46.89
Os02t0820500-01	Rice	plastid	42.44	46.76
TraesCS4D01G312700.1	Wheat	plastid	36.55	46.52
TraesCS4B01G316100.1	Wheat	plastid	36.13	45.99
HORVU0Hr1G017670.2	Barley	plastid	39.92	45.24
TraesCS6B01G438700.1	Wheat	plastid	39.92	45.02
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	29.83	42.26
Bra018260.1-P	Field mustard	nucleus	32.77	40.41
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	31.51	39.89
Bra014581.1-P	Field mustard	mitochondrion, nucleus	36.55	39.73
Bra009161.1-P	Field mustard	nucleus	29.83	38.8
Bra037322.1-P	Field mustard	nucleus	36.13	38.74
Bra037323.1-P	Field mustard	plastid	34.87	37.05
Bra007385.1-P	Field mustard	plastid	34.45	36.44
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	33.19	35.27
Bra025217.1-P	Field mustard	cytosol	15.55	34.58
Bra004910.1-P	Field mustard	plastid	36.55	34.39
Bra021737.1-P	Field mustard	cytosol	34.03	33.89
Bra034867.1-P	Field mustard	plastid	24.37	33.72
Bra040311.1-P	Field mustard	nucleus	36.55	33.59
Bra036436.1-P	Field mustard	plastid	38.24	33.09
Bra016876.1-P	Field mustard	nucleus	32.77	29.55
Bra032938.1-P	Field mustard	nucleus	19.33	15.65

Protein Annotations

EnsemblPlants:Bra000257.1	EnsemblPlants:Bra000257.1-P	EnsemblPlantsGene:Bra000257	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF4	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI00025403B9	UniProt:M4C7S9
MapMan:15.5.24	:	:	:	:	:

Description

AT2G42430 (E=2e-103) LBD16, ASL18 | LBD16 (LATERAL ORGAN BOUNDARIES-DOMAIN 16)

Coordinates

chrA03:+:10204676..10206488

Molecular Weight (calculated)

25952.4 Da

IEP (calculated)

7.368

GRAVY (calculated)

-0.372

Length

238 amino acids

Sequence
(BLAST)

001: MATSGNITTA GTGSPCGACK FLRRKCLSDC IFAPYFSSEQ GAERFAAIHK VFGASNVSKL LLKVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFSLQQ
101: QVAYLQAQVM QMKAHIAGHQ TSAAEGTHQF TTWQQTSGSP IDSAYSTPYN HHHHTYYGHI NPNNPVSPQS SLEESFSITS SDVTTTANVR ETHQTGGGVY
201: GQGELGFQEG YPNKKRSVSY CDSDLGELQA LALRMMKN

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.