Factsheet for Bra036436.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29956	Canola	plastid	99.64	99.64
Bra001087.1-P	Field mustard	plastid	39.27	90.0
AT3G03760.1	Thale cress	nucleus, plastid	87.64	88.28
VIT_08s0056g01650.t01	Wine grape	cytosol, nucleus, plastid	56.36	65.13
PGSC0003DMT400057829	Potato	nucleus	47.27	53.94
KRH32932	Soybean	cytosol, mitochondrion, nucleus	46.55	53.56
KRH71749	Soybean	cytosol, mitochondrion, nucleus	45.82	52.94
Solyc01g098220.1.1	Tomato	nucleus	46.18	52.7
KRG94981	Soybean	nucleus	43.27	49.79
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	33.45	41.07
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	25.09	41.07
Bra037323.1-P	Field mustard	plastid	32.0	39.29
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	26.55	38.83
Bra004693.1-P	Field mustard	plastid	34.18	38.52
Bra018260.1-P	Field mustard	nucleus	26.91	38.34
Bra000257.1-P	Field mustard	nucleus	33.09	38.24
Bra016877.1-P	Field mustard	nucleus	34.18	38.21
Bra037322.1-P	Field mustard	nucleus	29.45	36.49
Bra004910.1-P	Field mustard	plastid	33.45	36.36
Bra014581.1-P	Field mustard	mitochondrion, nucleus	28.73	36.07
Bra040311.1-P	Field mustard	nucleus	33.82	35.91
Bra009161.1-P	Field mustard	nucleus	23.64	35.52
Bra007385.1-P	Field mustard	plastid	28.73	35.11
Bra025217.1-P	Field mustard	cytosol	13.45	34.58
Bra021737.1-P	Field mustard	cytosol	28.36	32.64
Bra034867.1-P	Field mustard	plastid	19.27	30.81
Bra016876.1-P	Field mustard	nucleus	26.91	28.03
Bra032938.1-P	Field mustard	nucleus	16.73	15.65

Protein Annotations

EnsemblPlants:Bra036436.1	EnsemblPlants:Bra036436.1-P	EnsemblPlantsGene:Bra036436	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31529	PANTHER:PTHR31529:SF12	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002540F33
UniProt:M4F5T0	MapMan:15.5.24	:	:	:	:

Description

AT3G03760 (E=3e-083) LBD20 | LBD20 (LOB DOMAIN-CONTAINING PROTEIN 20)

Coordinates

chrA07:+:499213..500551

Molecular Weight (calculated)

29138.0 Da

IEP (calculated)

7.721

GRAVY (calculated)

-0.300

Length

275 amino acids

Sequence
(BLAST)

001: MADQQRSGHN TSDSRRKSAA GRRTSQHTTT SSLSSGGGAM AAAATTGTGT VSPCGACKFL RRKCVSGCIF APHFGSDQGA ARFAAVHKVF GASNVSKLLH
101: HIPVNRRHDA VVTISYEAQA RLSDPVYGCV STILALQQQV ASLQAELSLV QSQLINSRVA MANVMQQQQN HHQQHQQLVV MQQPEYSNNS SASTTLAGAA
201: MNSFTATAEA AAAVSYDVMA PANLEHSLQH VPRHQQGSGN QHEDEEESGT EFSVAVGSTA LAAEVIYPAE GFHRI

Best Arabidopsis Sequence Match ( AT3G03760.1 )
(BLAST)

001: MADQQRGHNT SDSRRKSLAG KRTSQQTPTS SLSSGGVSMA AATTGTGTAS PCGACKFLRR KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR

Arabidopsis Description

LBD20LOB domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.