CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71749	Soybean	cytosol, mitochondrion, nucleus	91.63	92.02
KRG94981	Soybean	nucleus	80.75	80.75
VIT_08s0056g01650.t01	Wine grape	cytosol, nucleus, plastid	63.18	63.45
Bra001087.1-P	Field mustard	plastid	28.03	55.83
Solyc01g098220.1.1	Tomato	nucleus	53.97	53.53
PGSC0003DMT400057829	Potato	nucleus	53.97	53.53
KRH19529	Soybean	plastid	26.36	52.07
CDX92049	Canola	plastid	53.56	47.94
AT3G03760.1	Thale cress	nucleus, plastid	54.39	47.62
CDX74209	Canola	plastid	53.56	46.89
Bra036436.1-P	Field mustard	plastid	53.56	46.55
CDY29956	Canola	plastid	53.14	46.18
KRH67347	Soybean	plastid	37.24	41.78
KRG95644	Soybean	nucleus	36.4	40.85
KRH32155	Soybean	plastid	35.98	40.38
KRG95645	Soybean	mitochondrion, nucleus	34.31	39.42
KRH76281	Soybean	cytosol, nucleus, plastid	32.64	39.39
KRH67348	Soybean	nucleus	34.31	38.68
KRH32157	Soybean	mitochondrion, nucleus	37.24	37.24
KRH19530	Soybean	mitochondrion, nucleus	36.4	36.71
KRH73761	Soybean	cytosol, nucleus, plastid	10.88	36.11
KRH65255	Soybean	cytosol, nucleus, plastid	31.8	35.85
KRG97704	Soybean	mitochondrion	26.78	35.75
KRH40590	Soybean	plastid	34.31	35.34
KRH76282	Soybean	plastid	36.4	35.22
KRH65254	Soybean	plastid	36.4	34.66
KRH14922	Soybean	mitochondrion	26.36	34.62
KRH73279	Soybean	mitochondrion	26.36	33.51
KRH31169	Soybean	mitochondrion	26.36	33.33
KRH00577	Soybean	plastid	32.22	32.91
KRH73061	Soybean	mitochondrion, nucleus	29.71	32.27
KRH59547	Soybean	mitochondrion, nucleus, plastid	19.25	32.17
KRH14351	Soybean	mitochondrion	19.25	32.17
KRH15078	Soybean	plastid	28.87	29.87

Protein Annotations

EMBL:ACUP02006204	EnsemblPlants:KRH32932	EnsemblPlantsGene:GLYMA_10G087200	EntrezGene:100813769	InterPro:IPR004883	InterPro:LOB
ncoils:Coil	PANTHER:PTHR31529	PANTHER:PTHR31529:SF12	PFAM:PF03195	PFscan:PS50891	ProteinID:KRH32932
ProteinID:KRH32932.1	SEG:seg	UniParc:UPI000233D3D6	UniProt:K7LI56	MapMan:15.5.24	:

Description

hypothetical protein

Coordinates

chr10:+:11237474..11239896

Molecular Weight (calculated)

25680.1 Da

IEP (calculated)

6.257

GRAVY (calculated)

-0.383

Length

239 amino acids

Sequence
(BLAST)

001: MAESQGEGGG DSGASGSRRR GIASRRAMAA QTQDEAMVES SPATPCGACK FLRRRCIEGC IFAPHFGNDQ GAAKFAAVHK VFGASNVSKL LSNISVNRRN
101: EAVTTISYEA QARLSDPVYG CVSTILALQQ QVATLQAELA MLQTQLMNSR FAYASALQTT QLQQPNMNAG ALQPAYSNNS CASTNLLNLS SFNNNTGFDL
201: EMDTAPSSSS LEPLQLTRLP LCKEEDEEES KTQQAFNHR

Best Arabidopsis Sequence Match ( AT3G03760.1 )
(BLAST)

001: MADQQRGHNT SDSRRKSLAG KRTSQQTPTS SLSSGGVSMA AATTGTGTAS PCGACKFLRR KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR

Arabidopsis Description

LBD20LOB domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.