Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036436.1-P | Field mustard | plastid | 88.28 | 87.64 |
| Bra001087.1-P | Field mustard | plastid | 38.46 | 87.5 |
| CDY29956 | Canola | plastid | 87.91 | 87.27 |
| CDX74209 | Canola | plastid | 86.08 | 86.08 |
| CDX92049 | Canola | plastid | 83.52 | 85.39 |
| VIT_08s0056g01650.t01 | Wine grape | cytosol, nucleus, plastid | 58.61 | 67.23 |
| PGSC0003DMT400057829 | Potato | nucleus | 48.72 | 55.19 |
| KRH32932 | Soybean | cytosol, mitochondrion, nucleus | 47.62 | 54.39 |
| Solyc01g098220.1.1 | Tomato | nucleus | 47.62 | 53.94 |
| KRH71749 | Soybean | cytosol, mitochondrion, nucleus | 46.15 | 52.94 |
| KRG94981 | Soybean | nucleus | 44.69 | 51.05 |
| AT4G00220.1 | Thale cress | plastid | 34.8 | 41.67 |
| AT5G06080.1 | Thale cress | mitochondrion, nucleus | 26.01 | 40.11 |
| AT2G31310.1 | Thale cress | nucleus | 27.11 | 39.36 |
| AT3G26660.1 | Thale cress | mitochondrion | 17.22 | 38.84 |
| AT2G42430.1 | Thale cress | plastid | 34.8 | 38.78 |
| AT2G45410.1 | Thale cress | cytosol, nucleus, plastid | 26.74 | 38.22 |
| AT3G26620.1 | Thale cress | mitochondrion | 16.85 | 38.02 |
| AT4G00210.1 | Thale cress | nucleus | 30.4 | 37.73 |
| AT3G58190.1 | Thale cress | plastid | 29.3 | 36.7 |
| AT2G45420.1 | Thale cress | plastid | 34.07 | 35.5 |
| AT3G11090.1 | Thale cress | mitochondrion | 19.78 | 32.73 |
| AT2G42440.1 | Thale cress | mitochondrion, nucleus | 26.74 | 29.92 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:821165 | UniProt:A0A178VCE0 | ProteinID:AAF00641.1 | EMBL:AB473854 | ProteinID:AEE73983.1 |
| EMBL:AK118291 | ArrayExpress:AT3G03760 | EnsemblPlantsGene:AT3G03760 | RefSeq:AT3G03760 | TAIR:AT3G03760 | RefSeq:AT3G03760-TAIR-G |
| EnsemblPlants:AT3G03760.1 | TAIR:AT3G03760.1 | Unigene:At.40935 | Unigene:At.74384 | EMBL:BT008589 | ncoils:Coil |
| GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009719 | GO:GO:0009753 | GO:GO:0009867 | GO:GO:0009987 | GO:GO:1900150 | InterPro:IPR004883 |
| Symbol:LBD20 | InterPro:LOB | InterPro:LOB_18/20 | RefSeq:NP_187026.1 | ProteinID:OAP03311.1 | PFAM:PF03195 |
| PIRSF:PIRSF038127 | PO:PO:0009005 | PO:PO:0025395 | PFscan:PS50891 | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF12 |
| UniProt:Q9SRV3 | UniParc:UPI00000041F9 | SEG:seg | : | : | : |
Description
LBD20LOB domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV3]
Coordinates
chr3:+:943557..944834
Molecular Weight (calculated)
29287.3 Da
IEP (calculated)
8.253
GRAVY (calculated)
-0.362
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQQRGHNT SDSRRKSLAG KRTSQQTPTS SLSSGGVSMA AATTGTGTAS PCGACKFLRR KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.