Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036436.1-P | Field mustard | plastid | 99.64 | 99.64 |
| CDX74209 | Canola | plastid | 87.64 | 88.28 |
| CDX92049 | Canola | plastid | 85.45 | 88.02 |
| AT3G03760.1 | Thale cress | nucleus, plastid | 87.27 | 87.91 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 27.27 | 72.82 |
| VIT_08s0056g01650.t01 | Wine grape | cytosol, nucleus, plastid | 56.0 | 64.71 |
| PGSC0003DMT400057829 | Potato | nucleus | 46.91 | 53.53 |
| KRH32932 | Soybean | cytosol, mitochondrion, nucleus | 46.18 | 53.14 |
| KRH71749 | Soybean | cytosol, mitochondrion, nucleus | 45.45 | 52.52 |
| Solyc01g098220.1.1 | Tomato | nucleus | 45.82 | 52.28 |
| KRG94981 | Soybean | nucleus | 42.91 | 49.37 |
| CDY24760 | Canola | nucleus | 27.27 | 41.67 |
| CDY15375 | Canola | nucleus | 27.27 | 41.67 |
| CDY07237 | Canola | nucleus | 29.09 | 41.45 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 33.45 | 41.07 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 33.09 | 40.62 |
| CDY10793 | Canola | nucleus | 26.55 | 40.56 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 17.45 | 40.0 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 26.91 | 39.36 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 16.73 | 39.32 |
| CDY07236 | Canola | plastid | 32.0 | 39.29 |
| CDY14831 | Canola | nucleus | 34.91 | 39.02 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 17.09 | 38.84 |
| CDY48982 | Canola | mitochondrion | 17.09 | 38.84 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 17.09 | 38.84 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 26.55 | 38.83 |
| CDY47969 | Canola | nucleus | 34.55 | 38.62 |
| CDY64515 | Canola | nucleus, plastid | 34.18 | 38.52 |
| CDY37038 | Canola | mitochondrion | 24.73 | 38.2 |
| CDY57108 | Canola | mitochondrion | 24.73 | 38.2 |
| CDY14832 | Canola | mitochondrion, nucleus | 27.64 | 38.19 |
| CDY70198 | Canola | nucleus | 33.82 | 38.11 |
| CDY28537 | Canola | mitochondrion | 16.73 | 38.02 |
| CDY22562 | Canola | nucleus | 32.73 | 37.82 |
| CDX71962 | Canola | plastid | 29.45 | 36.65 |
| CDY60434 | Canola | nucleus | 24.36 | 36.61 |
| CDY67746 | Canola | nucleus | 29.45 | 36.49 |
| CDY00547 | Canola | mitochondrion, nucleus | 28.73 | 36.41 |
| CDY18932 | Canola | plastid | 33.09 | 36.26 |
| CDX88974 | Canola | mitochondrion, nucleus | 28.73 | 36.07 |
| CDX98901 | Canola | nucleus | 24.0 | 36.07 |
| CDY06048 | Canola | plastid | 29.45 | 36.0 |
| CDY68635 | Canola | nucleus | 33.82 | 35.91 |
| CDY57109 | Canola | plastid | 33.09 | 35.0 |
| CDY19098 | Canola | cytosol | 28.0 | 32.22 |
| CDY00994 | Canola | plastid | 19.27 | 30.99 |
| CDY08551 | Canola | plastid | 19.27 | 30.81 |
| CDY47970 | Canola | nucleus | 27.27 | 28.41 |
Protein Annotations
| EnsemblPlants:CDY29956 | EnsemblPlantsGene:GSBRNA2T00044473001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31529 |
| PANTHER:PTHR31529:SF12 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY29956 | ProteinID:CDY29956.1 | SEG:seg |
| UniParc:UPI0004EE43CE | UniProt:A0A078GWP3 | MapMan:15.5.24 | : | : | : |
Description
BnaC01g40520DBnaC01g40520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWP3]
Coordinates
chrLK032247:+:74929..76550
Molecular Weight (calculated)
29148.0 Da
IEP (calculated)
7.721
GRAVY (calculated)
-0.303
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQQRSGHN TSDSRRKSAA GRRTSQHTTT SSLSSGGGAM AAAATTGTGT VSPCGACKFL RRKCVSGCIF APHFGSDQGA ARFAAVHKVF GASNVSKLLH
101: HIPVNRRHDA VVTISYEAQA RLSDPVYGCV STILALQQQV ASLQAELSLV QSQLINSRVA MANVMQQQQN HHQQHQQLVV MQQPEYSNNS SASTTLAGAA
201: MNSFTATAEA AAAVSYDVMA PANLEHPLQH VPRHQQGSGN QHEDEEESGT EFSVAVGSTA LAAEVIYPAE GFHRI
101: HIPVNRRHDA VVTISYEAQA RLSDPVYGCV STILALQQQV ASLQAELSLV QSQLINSRVA MANVMQQQQN HHQQHQQLVV MQQPEYSNNS SASTTLAGAA
201: MNSFTATAEA AAAVSYDVMA PANLEHPLQH VPRHQQGSGN QHEDEEESGT EFSVAVGSTA LAAEVIYPAE GFHRI
001: MADQQRGHNT SDSRRKSLAG KRTSQQTPTS SLSSGGVSMA AATTGTGTAS PCGACKFLRR KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR
Arabidopsis Description
LBD20LOB domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.