Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040311.1-P | Field mustard | nucleus | 92.31 | 92.66 |
| CDY68635 | Canola | nucleus | 91.92 | 92.28 |
| CDY18932 | Canola | plastid | 83.08 | 86.06 |
| AT2G45420.1 | Thale cress | plastid | 84.62 | 83.97 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 26.92 | 67.96 |
| VIT_15s0048g00830.t01 | Wine grape | nucleus | 63.46 | 65.74 |
| GSMUA_Achr5P11330_001 | Banana | plastid | 58.08 | 62.66 |
| GSMUA_Achr2P11240_001 | Banana | plastid | 55.77 | 61.44 |
| KRH00577 | Soybean | plastid | 54.62 | 60.68 |
| KRH40590 | Soybean | plastid | 53.46 | 59.91 |
| CDY07236 | Canola | plastid | 51.15 | 59.38 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 51.15 | 59.38 |
| KRH65254 | Soybean | plastid | 57.31 | 59.36 |
| KRH76282 | Soybean | plastid | 56.15 | 59.11 |
| GSMUA_Achr1P02520_001 | Banana | cytosol, nucleus, plastid | 55.0 | 59.09 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 50.77 | 58.93 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 57.31 | 57.98 |
| Zm00001d028413_P001 | Maize | plastid | 57.31 | 57.31 |
| Os03t0246900-00 | Rice | nucleus | 60.0 | 56.73 |
| Zm00001d047921_P001 | Maize | plastid | 57.69 | 56.6 |
| HORVU4Hr1G063160.1 | Barley | plastid | 55.0 | 55.86 |
| EER92557 | Sorghum | nucleus | 58.08 | 54.71 |
| TraesCS4D01G225200.1 | Wheat | nucleus | 54.62 | 54.62 |
| TraesCS4A01G067300.1 | Wheat | nucleus | 55.77 | 54.51 |
| TraesCS4B01G224600.1 | Wheat | plastid | 54.23 | 53.82 |
| Os10t0162600-00 | Rice | nucleus | 53.85 | 52.04 |
| KXG38649 | Sorghum | plastid | 49.23 | 49.23 |
| Zm00001d030364_P001 | Maize | plastid | 46.15 | 48.98 |
| CDY57108 | Canola | mitochondrion | 33.46 | 48.88 |
| CDY37038 | Canola | mitochondrion | 32.69 | 47.75 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 33.08 | 45.74 |
| CDY07237 | Canola | nucleus | 33.85 | 45.6 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 32.31 | 44.68 |
| CDY15375 | Canola | nucleus | 30.38 | 43.89 |
| CDY67746 | Canola | nucleus | 36.92 | 43.24 |
| CDY10793 | Canola | nucleus | 29.23 | 42.22 |
| CDY24760 | Canola | nucleus | 29.23 | 42.22 |
| CDX98901 | Canola | nucleus | 27.69 | 39.34 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 18.08 | 39.17 |
| CDY60434 | Canola | nucleus | 27.31 | 38.8 |
| CDY14832 | Canola | mitochondrion, nucleus | 29.62 | 38.69 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 17.31 | 38.46 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 17.31 | 37.19 |
| CDY28537 | Canola | mitochondrion | 17.31 | 37.19 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 17.31 | 37.19 |
| CDY48982 | Canola | mitochondrion | 16.92 | 36.36 |
| CDX71962 | Canola | plastid | 30.77 | 36.2 |
| CDX88974 | Canola | mitochondrion, nucleus | 30.38 | 36.07 |
| CDY64515 | Canola | nucleus, plastid | 33.85 | 36.07 |
| CDY00547 | Canola | mitochondrion, nucleus | 30.0 | 35.94 |
| CDY22562 | Canola | nucleus | 32.69 | 35.71 |
| CDY70198 | Canola | nucleus | 33.46 | 35.66 |
| CDY06048 | Canola | plastid | 30.77 | 35.56 |
| GSMUA_Achr4P28810_001 | Banana | nucleus | 40.0 | 35.25 |
| CDY14831 | Canola | nucleus | 33.08 | 34.96 |
| CDY47969 | Canola | nucleus | 32.69 | 34.55 |
| CDY19098 | Canola | cytosol | 31.15 | 33.89 |
| CDX74209 | Canola | plastid | 35.0 | 33.33 |
| CDY29956 | Canola | plastid | 35.0 | 33.09 |
| CDX92049 | Canola | plastid | 33.85 | 32.96 |
| CDY00994 | Canola | plastid | 20.77 | 31.58 |
| CDY08551 | Canola | plastid | 20.77 | 31.4 |
| CDY47970 | Canola | nucleus | 29.62 | 29.17 |
Protein Annotations
| EnsemblPlants:CDY57109 | EnsemblPlantsGene:GSBRNA2T00020559001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF3 |
| PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY57109 | ProteinID:CDY57109.1 | SEG:seg | UniParc:UPI0004EE7B59 |
| UniProt:A0A078J434 | MapMan:15.5.24 | : | : | : | : |
Description
BnaC04g56960DBnaC04g56960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J434]
Coordinates
chrLK033547:+:46057..48578
Molecular Weight (calculated)
27130.0 Da
IEP (calculated)
8.295
GRAVY (calculated)
-0.260
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGGNTLTS MGGSGCGGGS SGSGGGTSGG GGGGPCGACK FLRRKCVPGC IFAPYFDSEQ GSAYFAAVHK VFGASNISKL LLHIPVHRRS DAVVTICYEA
101: QARIRDPIYG CVAHIFALQQ QVVNLQAEVS YVQAHLASLE LPQPPPPPPP RPQSQPQLLF LTPPPLSITD LPASVSPLPS TYDLASTFDH AASPSSWATQ
201: QRRFVDPRHQ YGRSLPSSSA TLGLGGGNSD LEALAHELLH RQGSPPPTAT DDSQSRTKSR
101: QARIRDPIYG CVAHIFALQQ QVVNLQAEVS YVQAHLASLE LPQPPPPPPP RPQSQPQLLF LTPPPLSITD LPASVSPLPS TYDLASTFDH AASPSSWATQ
201: QRRFVDPRHQ YGRSLPSSSA TLGLGGGNSD LEALAHELLH RQGSPPPTAT DDSQSRTKSR
001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
Arabidopsis Description
LBD18LBD18 [Source:UniProtKB/TrEMBL;Acc:A0A178VVX7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.