CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007385.1-P	Field mustard	plastid	98.67	98.67
CDX71962	Canola	plastid	95.11	96.83
AT3G58190.1	Thale cress	plastid	86.22	88.99
CDX88974	Canola	mitochondrion, nucleus	84.89	87.21
CDY00547	Canola	mitochondrion, nucleus	84.0	87.1
CDY35378	Canola	cytosol, nucleus, plastid	31.56	68.93
CDY14832	Canola	mitochondrion, nucleus	60.0	67.84
CDY47970	Canola	nucleus	60.0	51.14
Os08t0563400-00	Rice	mitochondrion	45.78	47.91
CDY24760	Canola	nucleus	38.22	47.78
CDY15375	Canola	nucleus	38.22	47.78
CDY10793	Canola	nucleus	38.22	47.78
Zm00001d031882_P001	Maize	plastid	44.89	46.98
EES14059	Sorghum	mitochondrion	44.44	46.51
CDY60434	Canola	nucleus	35.56	43.72
CDX98901	Canola	nucleus	35.11	43.17
CDX75748	Canola	cytosol, mitochondrion, nucleus	22.22	41.67
CDX83633	Canola	cytosol, mitochondrion, nucleus, plastid	20.89	40.17
CDX82498	Canola	cytosol, nucleus, plastid	21.33	39.67
CDY13647	Canola	cytosol, mitochondrion, nucleus, plastid	20.89	38.84
CDY37038	Canola	mitochondrion	30.22	38.2
CDY57108	Canola	mitochondrion	30.22	38.2
CDY07237	Canola	nucleus	32.44	37.82
CDY19098	Canola	cytosol	40.0	37.66
CDY68561	Canola	cytosol, nucleus, plastid	31.11	37.23
CDX74738	Canola	cytosol, nucleus, plastid	31.11	37.23
CDY28537	Canola	mitochondrion	20.0	37.19
CDY64515	Canola	nucleus, plastid	40.0	36.89
CDY48982	Canola	mitochondrion	19.56	36.36
CDY14831	Canola	nucleus	39.56	36.18
CDY47969	Canola	nucleus	39.11	35.77
CDY70198	Canola	nucleus	38.67	35.66
CDY22562	Canola	nucleus	37.33	35.29
CDY07236	Canola	plastid	35.11	35.27
CDY67746	Canola	nucleus	33.78	34.23
CDY69735	Canola	cytosol, nucleus, plastid	33.78	33.93
CDY54923	Canola	cytosol, nucleus, plastid	33.33	33.48
CDY18932	Canola	plastid	36.0	32.27
CDX92049	Canola	plastid	36.89	31.09
CDY68635	Canola	nucleus	35.56	30.89
CDY57109	Canola	plastid	35.56	30.77
CDY00994	Canola	plastid	22.67	29.82
CDX74209	Canola	plastid	36.0	29.67
CDY08551	Canola	plastid	22.67	29.65
CDY29956	Canola	plastid	36.0	29.45

Protein Annotations

EnsemblPlants:CDY06048	EnsemblPlantsGene:GSBRNA2T00121905001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31529
PANTHER:PTHR31529:SF12	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY06048	ProteinID:CDY06048.1	SEG:seg
UniParc:UPI0004EE13A7	MapMan:15.5.24	:	:	:	:

Description

BnaA09g37320D

Coordinates

chrLK031967:+:466680..467479

Molecular Weight (calculated)

24801.6 Da

IEP (calculated)

6.711

GRAVY (calculated)

-0.478

Length

225 amino acids

Sequence
(BLAST)

001: MSSSSSSSLS GSPCGACKFL RRKCSKGCVF APYFCHEQGA SHFAAIHKVF GASNASKLLS QLPTSDRCEA AITISYEAQA RLQDPIYGCV SHIFALQQQV
101: VNLQAQLEIL KQQVAQSMMF ADSPSSENPN SFYGDTTKTT SYHHDHHQEH QNIYHHHDQT HLVNQIGSLG TGQHGDATVN SYPSQNSSGL GEFSIYPELE
201: QHLNTFNQDH LKELQSANFG YISFS

Best Arabidopsis Sequence Match ( AT3G58190.1 )
(BLAST)

001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS

Arabidopsis Description

LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.