CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88974	Canola	mitochondrion, nucleus	97.23	96.35
Bra014581.1-P	Field mustard	mitochondrion, nucleus	96.31	95.43
AT3G58190.1	Thale cress	plastid	84.79	84.4
CDY06048	Canola	plastid	87.1	84.0
CDX71962	Canola	plastid	85.25	83.71
CDY35378	Canola	cytosol, nucleus, plastid	32.26	67.96
CDY14832	Canola	mitochondrion, nucleus	61.75	67.34
CDY47970	Canola	nucleus	61.29	50.38
Os08t0563400-00	Rice	mitochondrion	47.47	47.91
CDY24760	Canola	nucleus	39.63	47.78
CDY10793	Canola	nucleus	39.63	47.78
CDY15375	Canola	nucleus	39.17	47.22
Zm00001d031882_P001	Maize	plastid	45.16	45.58
EES14059	Sorghum	mitochondrion	44.7	45.12
CDY60434	Canola	nucleus	35.48	42.08
CDX98901	Canola	nucleus	35.02	41.53
CDX75748	Canola	cytosol, mitochondrion, nucleus	22.12	40.0
CDX83633	Canola	cytosol, mitochondrion, nucleus, plastid	20.74	38.46
CDX82498	Canola	cytosol, nucleus, plastid	21.2	38.02
CDY19098	Canola	cytosol	41.47	37.66
CDY57108	Canola	mitochondrion	30.88	37.64
CDY37038	Canola	mitochondrion	30.88	37.64
CDY07237	Canola	nucleus	33.18	37.31
CDX74738	Canola	cytosol, nucleus, plastid	32.26	37.23
CDY68561	Canola	cytosol, nucleus, plastid	32.26	37.23
CDY13647	Canola	cytosol, mitochondrion, nucleus, plastid	20.74	37.19
CDY64515	Canola	nucleus, plastid	41.47	36.89
CDY14831	Canola	nucleus	41.47	36.59
CDY47969	Canola	nucleus	41.01	36.18
CDY70198	Canola	nucleus	40.09	35.66
CDY28537	Canola	mitochondrion	19.82	35.54
CDY22562	Canola	nucleus	38.71	35.29
CDY48982	Canola	mitochondrion	19.35	34.71
CDY07236	Canola	plastid	35.48	34.38
CDY67746	Canola	nucleus	35.02	34.23
CDY69735	Canola	cytosol, nucleus, plastid	35.02	33.93
CDY54923	Canola	cytosol, nucleus, plastid	34.56	33.48
CDY18932	Canola	plastid	36.41	31.47
CDY68635	Canola	nucleus	35.94	30.12
CDY57109	Canola	plastid	35.94	30.0
CDX92049	Canola	plastid	36.87	29.96
CDY00994	Canola	plastid	23.5	29.82
CDY08551	Canola	plastid	23.5	29.65
CDX74209	Canola	plastid	36.87	29.3
CDY29956	Canola	plastid	36.41	28.73

Protein Annotations

EnsemblPlants:CDY00547	EnsemblPlantsGene:GSBRNA2T00110291001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31529
PANTHER:PTHR31529:SF2	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY00547	ProteinID:CDY00547.1	SEG:seg
UniParc:UPI0004EE23A4	MapMan:15.5.24	:	:	:	:

Description

BnaC04g23780D

Coordinates

chrLK031920:-:174351..175118

Molecular Weight (calculated)

24081.9 Da

IEP (calculated)

6.822

GRAVY (calculated)

-0.422

Length

217 amino acids

Sequence
(BLAST)

001: MSSSGSPCGA CKFLRRKCAN GCVFAPYFCH DQGASHFAAI HKVFGASNAS KILSNLPISD RCEAAITISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ
101: LEILKQQAAQ SIMFADSPSS VNPNSYYGDN TKTSYHHDHH HEHRNIHHHD ETRLVYQTGS SWMVQHGDAT VNSYPTGNCS GFGEVSIYPD LEQHLNSFNQ
201: DHLKELQSAN FGYISFS

Best Arabidopsis Sequence Match ( AT3G58190.1 )
(BLAST)

001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS

Arabidopsis Description

LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.