CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47970	Canola	nucleus	96.48	72.73
CDY35378	Canola	cytosol, nucleus, plastid	35.68	68.93
AT2G42440.1	Thale cress	mitochondrion, nucleus	78.39	63.93
CDY00547	Canola	mitochondrion, nucleus	67.34	61.75
CDX88974	Canola	mitochondrion, nucleus	67.34	61.19
CDX71962	Canola	plastid	66.83	60.18
CDY06048	Canola	plastid	67.84	60.0
CDY24760	Canola	nucleus	42.21	46.67
CDY15375	Canola	nucleus	42.21	46.67
CDY10793	Canola	nucleus	42.21	46.67
Os08t0563400-00	Rice	mitochondrion	48.74	45.12
EES14059	Sorghum	mitochondrion	48.24	44.65
Zm00001d031882_P001	Maize	plastid	47.24	43.72
CDY57108	Canola	mitochondrion	35.18	39.33
CDY37038	Canola	mitochondrion	35.18	39.33
CDX75748	Canola	cytosol, mitochondrion, nucleus	23.12	38.33
CDX74738	Canola	cytosol, nucleus, plastid	35.68	37.77
CDY68561	Canola	cytosol, nucleus, plastid	35.68	37.77
CDX98901	Canola	nucleus	34.67	37.7
CDX82498	Canola	cytosol, nucleus, plastid	22.61	37.19
CDY28537	Canola	mitochondrion	22.61	37.19
CDY60434	Canola	nucleus	34.17	37.16
CDY19098	Canola	cytosol	44.22	36.82
CDX83633	Canola	cytosol, mitochondrion, nucleus, plastid	21.61	36.75
CDY13647	Canola	cytosol, mitochondrion, nucleus, plastid	22.11	36.36
CDY48982	Canola	mitochondrion	22.11	36.36
CDY07237	Canola	nucleus	35.18	36.27
CDY54923	Canola	cytosol, nucleus, plastid	37.69	33.48
CDY69735	Canola	cytosol, nucleus, plastid	37.69	33.48
CDY67746	Canola	nucleus	37.19	33.33
CDY22562	Canola	nucleus	39.7	33.19
CDY07236	Canola	plastid	37.19	33.04
CDY64515	Canola	nucleus, plastid	40.2	32.79
CDY47969	Canola	nucleus	39.7	32.11
CDY14831	Canola	nucleus	39.2	31.71
CDY70198	Canola	nucleus	38.19	31.15
CDY00994	Canola	plastid	26.63	30.99
CDY08551	Canola	plastid	26.63	30.81
CDY18932	Canola	plastid	38.19	30.28
CDY68635	Canola	nucleus	38.69	29.73
CDY57109	Canola	plastid	38.69	29.62
CDX92049	Canola	plastid	37.19	27.72
CDY29956	Canola	plastid	38.19	27.64
CDX74209	Canola	plastid	37.19	27.11

Protein Annotations

EnsemblPlants:CDY14832	EnsemblPlantsGene:GSBRNA2T00084711001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31529
PANTHER:PTHR31529:SF2	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY14832	ProteinID:CDY14832.1	SEG:seg
UniParc:UPI0004EDEA67	UniProt:A0A078FPN0	MapMan:15.5.24	:	:	:

Description

BnaC04g48290DBnaC04g48290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPN0]

Coordinates

chrLK032047:-:608369..609113

Molecular Weight (calculated)

22562.4 Da

IEP (calculated)

6.573

GRAVY (calculated)

-0.517

Length

199 amino acids

Sequence
(BLAST)

001: MTGSGSPCGA CKFLRRKCIY GCVFAPYFCH DQGASHFAAI HQVFGASNAS KLLSKLPMED RCEAAITIYY EAQARLQDPI YGCVAHIFSL QQQVVNLQAQ
101: LEILKQQATE SMMTTDTPSL ENPNYYRDTK LQQLQQSLDL HRHHNRHHQD RSLDTESDSD LRNIMTSYSE LDQHLNTFNQ YHNGGNDVLS ASFGYISYS

Best Arabidopsis Sequence Match ( AT2G42440.1 )
(BLAST)

001: MTGSGSPCGA CKFLRRRCVK GCVFAPYFCH EQGASHFAAI HQVFGASNAS KLLSHLPMED RREAATTIYY EAQARRQDPI YGCVSHIFSL QQQVVNLQTQ
101: LEILKQQATQ SMMAIDSPSI ENPNYYQDTK PQYLQESHDL HHHHLTTSNC QTEQNSDLKN IMTSCYHQME IETTPFTGAG GDTMAGSYYY NSSSGCSEEL
201: KSVSTNGEFS KYSELDQHLT NTFNQYRHGG NNLISESLGY ITYS

Arabidopsis Description

LBD17LOB domain-containing protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.