CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004693.1-P	Field mustard	plastid	95.9	95.9
CDY70198	Canola	nucleus	95.08	95.08
CDY35378	Canola	cytosol, nucleus, plastid	39.75	94.17
CDY47969	Canola	nucleus	90.16	89.43
AT2G42430.1	Thale cress	plastid	89.75	89.39
CDY14831	Canola	nucleus	89.34	88.62
CDY22562	Canola	nucleus	85.66	87.82
KRH19529	Soybean	plastid	34.02	68.59
VIT_07s0005g03030.t01	Wine grape	plastid	50.82	63.59
KRH32155	Soybean	plastid	52.05	59.62
PGSC0003DMT400025135	Potato	nucleus	52.46	57.92
GSMUA_Achr1P01350_001	Banana	nucleus	47.54	57.71
Solyc09g066260.2.1	Tomato	nucleus	51.23	54.35
EER95498	Sorghum	cytosol, nucleus, plastid	36.89	53.57
Zm00001d027678_P001	Maize	cytosol, nucleus, plastid	36.48	53.29
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	41.8	52.85
PGSC0003DMT400051680	Potato	nucleus	41.8	52.31
Solyc06g083930.1.1	Tomato	nucleus	41.8	52.04
HORVU4Hr1G080150.1	Barley	plastid	37.3	49.46
Os03t0149000-01	Rice	plastid	37.3	49.19
Zm00001d051891_P001	Maize	plastid	43.44	49.07
TraesCS4A01G415300.1	Wheat	plastid	36.89	48.65
EES07771	Sorghum	plastid	42.62	48.37
Os02t0820500-01	Rice	plastid	42.62	48.15
TraesCS6A01G398400.1	Wheat	plastid	40.57	48.06
TraesCS6D01G382600.1	Wheat	plastid	40.98	47.85
TraesCS4D01G312700.1	Wheat	plastid	36.48	47.59
TraesCS4B01G316100.1	Wheat	plastid	36.07	47.06
HORVU0Hr1G017670.2	Barley	plastid	40.16	46.67
TraesCS6B01G438700.1	Wheat	plastid	39.75	45.97
CDY24760	Canola	nucleus	32.79	44.44
CDY10793	Canola	nucleus	32.79	44.44
CDY15375	Canola	nucleus	31.97	43.33
CDX75748	Canola	cytosol, mitochondrion, nucleus	21.31	43.33
CDX83633	Canola	cytosol, mitochondrion, nucleus, plastid	20.49	42.73
CDX82498	Canola	cytosol, nucleus, plastid	20.9	42.15
CDX88974	Canola	mitochondrion, nucleus	37.7	42.01
CDY07237	Canola	nucleus	33.2	41.97
CDY00547	Canola	mitochondrion, nucleus	36.89	41.47
CDY13647	Canola	cytosol, mitochondrion, nucleus, plastid	20.49	41.32
CDY60434	Canola	nucleus	30.33	40.44
CDX71962	Canola	plastid	36.48	40.27
CDY14832	Canola	mitochondrion, nucleus	32.79	40.2
CDY06048	Canola	plastid	36.89	40.0
CDX74738	Canola	cytosol, nucleus, plastid	30.74	39.89
CDY68561	Canola	cytosol, nucleus, plastid	30.74	39.89
CDX98901	Canola	nucleus	29.92	39.89
CDY37038	Canola	mitochondrion	28.69	39.33
CDY57108	Canola	mitochondrion	28.69	39.33
CDY67746	Canola	nucleus	35.66	39.19
CDY28537	Canola	mitochondrion	19.26	38.84
CDY48982	Canola	mitochondrion	18.85	38.02
CDY07236	Canola	plastid	34.02	37.05
CDY18932	Canola	plastid	36.07	35.06
CDY69735	Canola	cytosol, nucleus, plastid	31.97	34.82
CDY54923	Canola	cytosol, nucleus, plastid	31.56	34.38
CDY68635	Canola	nucleus	36.48	34.36
CDY29956	Canola	plastid	38.52	34.18
CDX74209	Canola	plastid	38.11	34.07
CDY19098	Canola	cytosol	33.2	33.89
CDY57109	Canola	plastid	36.07	33.85
CDX92049	Canola	plastid	36.89	33.71
CDY08551	Canola	plastid	22.54	31.98
CDY00994	Canola	plastid	22.13	31.58
CDY47970	Canola	nucleus	32.79	30.3

Protein Annotations

EnsemblPlants:CDY64515	EnsemblPlantsGene:GSBRNA2T00042308001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529	PANTHER:PTHR31529:SF4
PFAM:PF03195	PFscan:PS50891	ProteinID:CDY64515	ProteinID:CDY64515.1	SEG:seg	UniParc:UPI0004EB79E8
UniProt:A0A078JD18	MapMan:15.5.24	:	:	:	:

Description

BnaC04g52730DBnaC04g52730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JD18]

Coordinates

chrLK034478:-:12229..13306

Molecular Weight (calculated)

26220.6 Da

IEP (calculated)

7.988

GRAVY (calculated)

-0.363

Length

244 amino acids

Sequence
(BLAST)

001: MATSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAYLQAQVM QMKAQIAGHQ TSAAGDLRNS SGNTHEFTTW QQSSGSPICC AYATPYDHHH PYYGHVNPNN QVSPQSSLEE SLSSTSSNVT TTANVRESHQ
201: TGGGVYGHGG LGFHEGYPNK KRSVNYCNSD LGELQALALR MMKN

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.