CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 6
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051891_P001	Maize	plastid	93.95	93.52
Os02t0820500-01	Rice	plastid	84.65	84.26
TraesCS6D01G382600.1	Wheat	plastid	73.02	75.12
TraesCS6A01G398400.1	Wheat	plastid	70.7	73.79
CDY35378	Canola	cytosol, nucleus, plastid	34.88	72.82
HORVU0Hr1G017670.2	Barley	plastid	69.3	70.95
TraesCS6B01G438700.1	Wheat	plastid	69.3	70.62
KRH19529	Soybean	plastid	33.02	58.68
VIT_07s0005g03030.t01	Wine grape	plastid	51.16	56.41
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	47.44	52.85
EER95498	Sorghum	cytosol, nucleus, plastid	40.93	52.38
GSMUA_Achr1P01350_001	Banana	nucleus	45.12	48.26
PGSC0003DMT400025135	Potato	nucleus	49.3	47.96
KRH32155	Soybean	plastid	47.44	47.89
Solyc06g083930.1.1	Tomato	nucleus	40.47	44.39
Solyc09g066260.2.1	Tomato	nucleus	47.44	44.35
PGSC0003DMT400051680	Potato	nucleus	39.53	43.59
Bra004693.1-P	Field mustard	plastid	48.84	43.03
CDY14831	Canola	nucleus	48.84	42.68
CDY64515	Canola	nucleus, plastid	48.37	42.62
Bra000257.1-P	Field mustard	nucleus	46.98	42.44
CDY47969	Canola	nucleus	48.37	42.28
CDY70198	Canola	nucleus	47.91	42.21
AT2G42430.1	Thale cress	plastid	47.91	42.04
CDY22562	Canola	nucleus	46.51	42.02
Bra016877.1-P	Field mustard	nucleus	47.91	41.87
EES14059	Sorghum	mitochondrion	41.4	41.4
EER92849	Sorghum	mitochondrion	46.98	41.22
EES01535	Sorghum	plastid	37.21	35.87
EER92557	Sorghum	nucleus	42.33	32.97
KXG38649	Sorghum	plastid	38.6	31.92
EER93325	Sorghum	plastid	24.65	29.44
OQU80868	Sorghum	peroxisome	26.98	28.86
OQU88465	Sorghum	nucleus	31.16	7.16

Protein Annotations

EnsemblPlants:EES07771	EnsemblPlantsGene:SORBI_3004G348800	EntrezGene:8055323	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31529	PANTHER:PTHR31529:SF20	PFAM:PF03195	PFscan:PS50891	ProteinID:EES07771	ProteinID:EES07771.1
RefSeq:XP_002454795.1	SEG:seg	UniParc:UPI0001A860F1	UniProt:C5XVZ8	MapMan:15.5.24	:

Description

hypothetical protein

Coordinates

chr4:-:67773110..67774620

Molecular Weight (calculated)

22276.6 Da

IEP (calculated)

7.896

GRAVY (calculated)

0.128

Length

215 amino acids

Sequence
(BLAST)

001: MAGAAAAAAA NGGTTAAAAA ATGAGSPCGA CKFLRRRCVP ECVFAPYFSS DQGAARFAAI HKVFGASNAS KLLSHLPVAD RCEAVVTITY EAQARLRDPV
101: YGCVAQIFAL QQQVAILQAQ LMQAKAQLAC GVQGAAHSPA SHQWPDSASI SALLRQDTAC SARRPGPLDD CFMPELMAGF RDDVAAAAQH CAGKVDAGEL
201: QYLAQAMMRS PNYSL

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.