Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 5
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35378 | Canola | cytosol, nucleus, plastid | 39.18 | 93.2 |
| CDY47969 | Canola | nucleus | 92.24 | 91.87 |
| Bra016877.1-P | Field mustard | nucleus | 91.84 | 91.46 |
| CDY14831 | Canola | nucleus | 91.43 | 91.06 |
| CDY70198 | Canola | nucleus | 90.2 | 90.57 |
| Bra004693.1-P | Field mustard | plastid | 89.8 | 90.16 |
| CDY64515 | Canola | nucleus, plastid | 89.39 | 89.75 |
| Bra000257.1-P | Field mustard | nucleus | 86.94 | 89.5 |
| CDY22562 | Canola | nucleus | 86.12 | 88.66 |
| KRH19529 | Soybean | plastid | 33.47 | 67.77 |
| VIT_07s0005g03030.t01 | Wine grape | plastid | 50.2 | 63.08 |
| GSMUA_Achr1P01350_001 | Banana | nucleus | 48.16 | 58.71 |
| KRH32155 | Soybean | plastid | 51.02 | 58.69 |
| PGSC0003DMT400025135 | Potato | nucleus | 51.84 | 57.47 |
| EER95498 | Sorghum | cytosol, nucleus, plastid | 37.14 | 54.17 |
| Solyc09g066260.2.1 | Tomato | nucleus | 50.61 | 53.91 |
| Zm00001d027678_P001 | Maize | cytosol, nucleus, plastid | 36.73 | 53.89 |
| GSMUA_Achr5P13230_001 | Banana | mitochondrion, plastid | 42.04 | 53.37 |
| Solyc06g083930.1.1 | Tomato | nucleus | 42.45 | 53.06 |
| PGSC0003DMT400051680 | Potato | nucleus | 41.63 | 52.31 |
| Os03t0149000-01 | Rice | plastid | 37.96 | 50.27 |
| HORVU4Hr1G080150.1 | Barley | plastid | 37.14 | 49.46 |
| TraesCS4A01G415300.1 | Wheat | plastid | 37.14 | 49.19 |
| Zm00001d051891_P001 | Maize | plastid | 42.45 | 48.15 |
| TraesCS4D01G312700.1 | Wheat | plastid | 36.73 | 48.13 |
| EES07771 | Sorghum | plastid | 42.04 | 47.91 |
| Os02t0820500-01 | Rice | plastid | 42.04 | 47.69 |
| TraesCS4B01G316100.1 | Wheat | plastid | 36.33 | 47.59 |
| TraesCS6A01G398400.1 | Wheat | plastid | 40.0 | 47.57 |
| TraesCS6D01G382600.1 | Wheat | plastid | 40.41 | 47.37 |
| HORVU0Hr1G017670.2 | Barley | plastid | 39.18 | 45.71 |
| TraesCS6B01G438700.1 | Wheat | plastid | 39.18 | 45.5 |
| AT5G06080.1 | Thale cress | mitochondrion, nucleus | 30.2 | 41.81 |
| AT3G26660.1 | Thale cress | mitochondrion | 20.0 | 40.5 |
| AT3G26620.1 | Thale cress | mitochondrion | 20.0 | 40.5 |
| AT2G31310.1 | Thale cress | nucleus | 31.02 | 40.43 |
| AT3G58190.1 | Thale cress | plastid | 35.1 | 39.45 |
| AT2G45410.1 | Thale cress | cytosol, nucleus, plastid | 29.8 | 38.22 |
| AT4G00210.1 | Thale cress | nucleus | 34.29 | 38.18 |
| AT4G00220.1 | Thale cress | plastid | 35.51 | 38.16 |
| AT3G03760.1 | Thale cress | nucleus, plastid | 38.78 | 34.8 |
| AT2G45420.1 | Thale cress | plastid | 37.14 | 34.73 |
| AT3G11090.1 | Thale cress | mitochondrion | 23.27 | 34.55 |
| AT2G42440.1 | Thale cress | mitochondrion, nucleus | 33.47 | 33.61 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:818843 | ProteinID:AAD23725.1 | EMBL:AB473851 | ProteinID:AEC10119.1 | EMBL:AF345339 |
| EMBL:AF410334 | EMBL:AF447890 | EMBL:AK230268 | ArrayExpress:AT2G42430 | EnsemblPlantsGene:AT2G42430 | RefSeq:AT2G42430 |
| TAIR:AT2G42430 | RefSeq:AT2G42430-TAIR-G | EnsemblPlants:AT2G42430.1 | TAIR:AT2G42430.1 | EMBL:BT000866 | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0010311 | GO:GO:0045893 | InterPro:IPR004883 | Symbol:LBD16 | InterPro:LOB | RefSeq:NP_565973.1 |
| PFAM:PF03195 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009025 | PFscan:PS50891 | PANTHER:PTHR31529 |
| PANTHER:PTHR31529:SF4 | UniProt:Q9SLB7 | UniParc:UPI0000001AF5 | SEG:seg | : | : |
Description
LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
Coordinates
chr2:+:17663353..17665337
Molecular Weight (calculated)
26466.9 Da
IEP (calculated)
7.865
GRAVY (calculated)
-0.373
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.