Factsheet for Solyc06g083930.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051680	Potato	nucleus	96.43	96.92
CDY35378	Canola	cytosol, nucleus, plastid	37.76	71.84
VIT_07s0005g03030.t01	Wine grape	plastid	59.18	59.49
KRG95644	Soybean	nucleus	61.73	56.81
KRH67347	Soybean	plastid	61.22	56.34
Solyc09g066260.2.1	Tomato	nucleus	64.8	55.22
GSMUA_Achr3P27340_001	Banana	mitochondrion, plastid	48.47	51.91
EER95498	Sorghum	cytosol, nucleus, plastid	44.39	51.79
Zm00001d027678_P001	Maize	cytosol, nucleus, plastid	43.37	50.9
Os03t0149000-01	Rice	plastid	45.92	48.65
HORVU4Hr1G080150.1	Barley	plastid	42.86	45.65
TraesCS4A01G415300.1	Wheat	plastid	42.86	45.41
TraesCS4D01G312700.1	Wheat	plastid	42.35	44.38
TraesCS4B01G316100.1	Wheat	plastid	41.84	43.85
AT2G42430.1	Thale cress	plastid	53.06	42.45
Solyc01g091400.2.1	Tomato	plastid	35.71	41.92
CDY64515	Canola	nucleus, plastid	52.04	41.8
Bra004693.1-P	Field mustard	plastid	52.04	41.8
Bra000257.1-P	Field mustard	nucleus	50.0	41.18
CDY14831	Canola	nucleus	51.53	41.06
CDY70198	Canola	nucleus	51.02	40.98
CDY22562	Canola	nucleus	49.49	40.76
Bra016877.1-P	Field mustard	nucleus	51.02	40.65
CDY47969	Canola	nucleus	51.02	40.65
Solyc01g109240.1.1	Tomato	mitochondrion	25.0	40.5
EES07771	Sorghum	plastid	44.39	40.47
TraesCS6A01G398400.1	Wheat	plastid	42.35	40.29
TraesCS6D01G382600.1	Wheat	plastid	42.86	40.19
Zm00001d051891_P001	Maize	plastid	43.88	39.81
Os02t0820500-01	Rice	plastid	43.88	39.81
HORVU0Hr1G017670.2	Barley	plastid	41.84	39.05
TraesCS6B01G438700.1	Wheat	plastid	41.33	38.39
Solyc09g066270.2.1	Tomato	nucleus	46.43	37.3
Solyc03g095940.1.1	Tomato	plastid	31.12	35.88
Solyc06g064540.1.1	Tomato	mitochondrion, plastid	25.51	33.78
Solyc01g098220.1.1	Tomato	nucleus	41.33	33.61
Solyc01g091420.1.1	Tomato	plastid	38.27	27.68

Protein Annotations

EnsemblPlants:Solyc06g083930.1.1	EnsemblPlantsGene:Solyc06g083930.1	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529	PANTHER:PTHR31529:SF4
PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000276B7C9	UniProt:K4CAP8	MapMan:15.5.24

Description

No Description!

Coordinates

chr6:-:49225235..49226499

Molecular Weight (calculated)

21611.3 Da

IEP (calculated)

6.987

GRAVY (calculated)

-0.360

Length

196 amino acids

Sequence
(BLAST)

001: MASSGSPCGA CKFLRRKCAV DCIFAPYFNS EEGPSKFAAI HKVFGASNVS KLLHNVPTDD RCDAVVTISY EAQARIKDPV YGCVANIFAL QQQVAYLQSQ
101: LMQVKGQLAQ SLMNSNNCYN PQWINNNINM TSSSGQMTSS SFPANYPNYI NLKSNSSPQS SSMESVDHYS DGHGIMNMQD IQSLDHFLYQ PYNTSS

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.