Factsheet for Solyc09g066260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025135	Potato	nucleus	88.7	92.31
CDY35378	Canola	cytosol, nucleus, plastid	35.22	78.64
VIT_07s0005g03030.t01	Wine grape	plastid	61.3	72.31
KRG95644	Soybean	nucleus	60.43	65.26
Solyc06g083930.1.1	Tomato	nucleus	55.22	64.8
KRH67347	Soybean	plastid	59.13	63.85
GSMUA_Achr3P27340_001	Banana	mitochondrion, plastid	49.57	62.3
Bra004693.1-P	Field mustard	plastid	54.78	51.64
Bra000257.1-P	Field mustard	nucleus	53.04	51.26
CDY64515	Canola	nucleus, plastid	54.35	51.23
CDY22562	Canola	nucleus	52.61	50.84
CDY70198	Canola	nucleus	53.91	50.82
AT2G42430.1	Thale cress	plastid	53.91	50.61
EER95498	Sorghum	cytosol, nucleus, plastid	36.96	50.6
CDY47969	Canola	nucleus	53.91	50.41
CDY14831	Canola	nucleus	53.91	50.41
Bra016877.1-P	Field mustard	nucleus	53.91	50.41
Zm00001d027678_P001	Maize	cytosol, nucleus, plastid	36.09	49.7
HORVU4Hr1G080150.1	Barley	plastid	38.26	47.83
TraesCS4A01G415300.1	Wheat	plastid	38.26	47.57
Os03t0149000-01	Rice	plastid	38.26	47.57
EES07771	Sorghum	plastid	44.35	47.44
Zm00001d051891_P001	Maize	plastid	43.91	46.76
TraesCS4D01G312700.1	Wheat	plastid	37.83	46.52
Os02t0820500-01	Rice	plastid	43.48	46.3
TraesCS4B01G316100.1	Wheat	plastid	37.39	45.99
TraesCS6A01G398400.1	Wheat	plastid	40.87	45.63
TraesCS6D01G382600.1	Wheat	plastid	40.87	44.98
Solyc01g091400.2.1	Tomato	plastid	32.61	44.91
HORVU0Hr1G017670.2	Barley	plastid	40.0	43.81
TraesCS6B01G438700.1	Wheat	plastid	39.57	43.13
Solyc01g109240.1.1	Tomato	mitochondrion	22.17	42.15
Solyc09g066270.2.1	Tomato	nucleus	43.04	40.57
Solyc03g095940.1.1	Tomato	plastid	26.96	36.47
Solyc01g098220.1.1	Tomato	nucleus	37.39	35.68
Solyc06g064540.1.1	Tomato	mitochondrion, plastid	21.3	33.11
Solyc01g091420.1.1	Tomato	plastid	37.83	32.1

Protein Annotations

EnsemblPlants:Solyc09g066260.2.1	EnsemblPlantsGene:Solyc09g066260.2	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529	PANTHER:PTHR31529:SF4
PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000276AD51	UniProt:K4CUQ1	MapMan:15.5.24

Description

No Description!

Coordinates

chr9:+:64687210..64688904

Molecular Weight (calculated)

25571.8 Da

IEP (calculated)

8.475

GRAVY (calculated)

-0.572

Length

230 amino acids

Sequence
(BLAST)

001: MSTTGTGSSP CGACKFLRRK CAVDCIFAPY FCSEQGPARF AAIHKVFGAS NVSKLLLHVP VPDRCEAVFT IAYEAQARIK DPVYGCVAHI YSLQQQVAYL
101: QAQLMQVKTQ LAQSLLNTSR NSENFYPHQW SNNNMTSSFQ PSNNNNNNNP THTMNSNSSP QSSLESIDHY SDGINNMPEI QSRLDQVFYH QAAYTSNSNS
201: NSNSNSNSRK RPSQTELGEL QALALRMMKN

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.