Factsheet for PGSC0003DMT400025135

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g066260.2.1	Tomato	nucleus	92.31	88.7
CDY35378	Canola	cytosol, nucleus, plastid	36.65	78.64
VIT_07s0005g03030.t01	Wine grape	plastid	64.71	73.33
KRG95644	Soybean	nucleus	63.35	65.73
PGSC0003DMT400051680	Potato	nucleus	57.47	65.13
KRH67347	Soybean	plastid	61.54	63.85
GSMUA_Achr3P27340_001	Banana	mitochondrion, plastid	50.68	61.2
PGSC0003DMT400033253	Potato	plastid	33.94	53.96
Bra004693.1-P	Field mustard	plastid	57.92	52.46
CDY64515	Canola	nucleus, plastid	57.92	52.46
EER95498	Sorghum	cytosol, nucleus, plastid	39.82	52.38
AT2G42430.1	Thale cress	plastid	57.47	51.84
CDY70198	Canola	nucleus	57.01	51.64
Zm00001d027678_P001	Maize	cytosol, nucleus, plastid	38.91	51.5
Bra000257.1-P	Field mustard	nucleus	54.75	50.84
CDY47969	Canola	nucleus	56.56	50.81
CDY14831	Canola	nucleus	56.56	50.81
Bra016877.1-P	Field mustard	nucleus	56.56	50.81
CDY22562	Canola	nucleus	54.3	50.42
EES07771	Sorghum	plastid	47.96	49.3
Os03t0149000-01	Rice	plastid	41.18	49.19
Zm00001d051891_P001	Maize	plastid	47.96	49.07
Os02t0820500-01	Rice	plastid	47.51	48.61
TraesCS6A01G398400.1	Wheat	plastid	44.8	48.06
TraesCS6D01G382600.1	Wheat	plastid	45.25	47.85
HORVU4Hr1G080150.1	Barley	plastid	39.82	47.83
TraesCS4A01G415300.1	Wheat	plastid	39.82	47.57
HORVU0Hr1G017670.2	Barley	plastid	44.34	46.67
TraesCS4D01G312700.1	Wheat	plastid	39.37	46.52
TraesCS4B01G316100.1	Wheat	plastid	38.91	45.99
TraesCS6B01G438700.1	Wheat	plastid	43.89	45.97
PGSC0003DMT400025142	Potato	nucleus	46.15	41.63
PGSC0003DMT400057829	Potato	nucleus	42.99	39.42
PGSC0003DMT400033221	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	23.08	38.35
PGSC0003DMT400097267	Potato	cytosol, mitochondrion, plastid	24.43	34.84
PGSC0003DMT400071281	Potato	plastid	26.7	33.33

Protein Annotations

EnsemblPlants:PGSC0003DMT400025135	EnsemblPlantsGene:PGSC0003DMG400009713	EntrezGene:102588369	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF4	PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG400009713	RefSeq:XP_006351642.1	SEG:seg
UniParc:UPI000296C84C	UniProt:M1AL22	MapMan:15.5.24	:	:	:

Description

LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009713]

Coordinates

chr9:+:49719379..49720761

Molecular Weight (calculated)

24620.9 Da

IEP (calculated)

8.473

GRAVY (calculated)

-0.484

Length

221 amino acids

Sequence
(BLAST)

001: MATTGTGSSP CGACKFLRRK CAVDCVFAPY FCSEQGPARF AAIHKVFGAS NVSKLLLHLP VPDRCEAVVT IAYEAQARIK DPVYGCVAHI FALQQQVAYL
101: QSQLMQVKTQ LAQSLLNNSR NSDNFYPHQW SNNNMASSFQ QNNNNNPTYT MNSNSSPQSS LESIDHYSDG INNNNNNVPE IQSRLDQVFY HQAAYTSNSR
201: KRPSQTELGE LQALALRMMK N

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.