Factsheet for PGSC0003DMT400033221

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 3
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g091400.2.1	Tomato	plastid	85.71	68.26
KRH76281	Soybean	cytosol, nucleus, plastid	57.14	38.38
VIT_15s0048g00840.t01	Wine grape	cytosol, nucleus, plastid	53.38	36.6
PGSC0003DMT400033253	Potato	plastid	36.84	35.25
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	44.36	35.12
HORVU0Hr1G020290.1	Barley	cytosol, plastid	32.33	34.4
CDY57108	Canola	mitochondrion	45.11	33.71
CDY37038	Canola	mitochondrion	44.36	33.15
KRH65255	Soybean	cytosol, nucleus, plastid	52.63	33.02
AT2G45410.1	Thale cress	cytosol, nucleus, plastid	47.37	32.98
CDY07237	Canola	nucleus	47.37	32.64
CDY68561	Canola	cytosol, nucleus, plastid	44.36	31.38
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	44.36	31.38
CDX74738	Canola	cytosol, nucleus, plastid	44.36	31.38
AT4G00210.1	Thale cress	nucleus	51.88	31.36
Bra037322.1-P	Field mustard	nucleus	51.13	30.63
CDY67746	Canola	nucleus	51.13	30.63
PGSC0003DMT400051680	Potato	nucleus	36.84	25.13
PGSC0003DMT400071281	Potato	plastid	32.33	24.29
HORVU7Hr1G046690.1	Barley	cytosol, nucleus, plastid	39.85	23.25
TraesCS7A01G228900.1	Wheat	cytosol, nucleus, plastid	39.85	23.14
TraesCS7D01G229900.1	Wheat	cytosol, nucleus, plastid	39.85	23.14
PGSC0003DMT400025135	Potato	nucleus	38.35	23.08
TraesCS7B01G195100.1	Wheat	cytosol, nucleus, plastid	39.1	22.71
PGSC0003DMT400057829	Potato	nucleus	39.85	21.99
PGSC0003DMT400097267	Potato	cytosol, mitochondrion, plastid	24.81	21.29
PGSC0003DMT400025142	Potato	nucleus	37.59	20.41

Protein Annotations

EnsemblPlants:PGSC0003DMT400033221	EnsemblPlantsGene:PGSC0003DMG400012757	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529	PANTHER:PTHR31529:SF7
PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG400012757	SEG:seg	UniParc:UPI0002953A6C	UniProt:M1AYS1
MapMan:15.5.24	:	:	:	:	:

Description

LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012757]

Coordinates

chr1:-:70793623..70795762

Molecular Weight (calculated)

14458.5 Da

IEP (calculated)

6.487

GRAVY (calculated)

0.187

Length

133 amino acids

Sequence
(BLAST)

001: MAHFAAVHKV FGASNASKLL LTIPPNKRLE TVVTLCYEAL ARVRDPVYGC VGHIFSLQQQ AVTLQAELAY VQARISTLQH HQHLPMPPPT PSQTDVAAAC
101: CCNLASLVCT TMDPSIDITD LCNVLDQQLD NSM

Best Arabidopsis Sequence Match ( AT4G00210.1 )
(BLAST)

001: MSGSTTGCGG PCGACKFLRR KCVADCVFAP YFDSVEGTSH FTAVHKVFGA SNASKLLMMI PASRRLDAVV TLTYEALARL RDPVYGCVGH IFALQHQVMN
101: LQAELAYVQT QLSTLQGLPP PNSQNNSRTE AASSSNVPLI SSVDSKDNMS SSSSHIPCMS QQQEQEQPKE AIEVPTESVD LSTFFGLENP VDEDGDLNAL
201: AREFFTKYLT GGKYRPSSLI

Arabidopsis Description

LBD31LOB domain-containing protein 31 [Source:UniProtKB/Swiss-Prot;Acc:O81322]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.