Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037322.1-P | Field mustard | nucleus | 100.0 | 86.94 |
| CDY67746 | Canola | nucleus | 100.0 | 86.94 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 34.2 | 64.08 |
| AT4G00210.1 | Thale cress | nucleus | 72.54 | 63.64 |
| HORVU0Hr1G020290.1 | Barley | cytosol, plastid | 33.16 | 51.2 |
| Solyc01g091400.2.1 | Tomato | plastid | 43.52 | 50.3 |
| PGSC0003DMT400033221 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 32.64 | 47.37 |
| CDY57108 | Canola | mitochondrion | 43.01 | 46.63 |
| CDY37038 | Canola | mitochondrion | 42.49 | 46.07 |
| VIT_15s0048g00840.t01 | Wine grape | cytosol, nucleus, plastid | 46.11 | 45.88 |
| KRH76281 | Soybean | cytosol, nucleus, plastid | 46.63 | 45.45 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 44.04 | 45.21 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 44.04 | 45.21 |
| KRH65255 | Soybean | cytosol, nucleus, plastid | 47.15 | 42.92 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 26.42 | 42.5 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 24.87 | 41.03 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 25.39 | 40.5 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 25.39 | 40.5 |
| CDY28537 | Canola | mitochondrion | 24.87 | 39.67 |
| CDY48982 | Canola | mitochondrion | 24.35 | 38.84 |
| CDY07236 | Canola | plastid | 45.08 | 38.84 |
| CDX98901 | Canola | nucleus | 36.79 | 38.8 |
| CDY60434 | Canola | nucleus | 36.27 | 38.25 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 44.04 | 37.95 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 44.04 | 37.95 |
| CDY24760 | Canola | nucleus | 34.2 | 36.67 |
| CDY10793 | Canola | nucleus | 34.2 | 36.67 |
| CDY15375 | Canola | nucleus | 33.68 | 36.11 |
| CDY14832 | Canola | mitochondrion, nucleus | 36.27 | 35.18 |
| CDY08551 | Canola | plastid | 30.57 | 34.3 |
| CDY00994 | Canola | plastid | 30.05 | 33.92 |
| CDY57109 | Canola | plastid | 45.6 | 33.85 |
| CDY68635 | Canola | nucleus | 45.08 | 33.59 |
| CDX71962 | Canola | plastid | 38.34 | 33.48 |
| CDX88974 | Canola | mitochondrion, nucleus | 37.82 | 33.33 |
| CDY64515 | Canola | nucleus, plastid | 41.97 | 33.2 |
| CDY22562 | Canola | nucleus | 40.93 | 33.19 |
| TraesCS7D01G229900.1 | Wheat | cytosol, nucleus, plastid | 39.38 | 33.19 |
| CDY00547 | Canola | mitochondrion, nucleus | 37.31 | 33.18 |
| CDY18932 | Canola | plastid | 43.01 | 33.07 |
| CDY70198 | Canola | nucleus | 41.45 | 32.79 |
| TraesCS7A01G228900.1 | Wheat | cytosol, nucleus, plastid | 38.86 | 32.75 |
| CDY47969 | Canola | nucleus | 41.45 | 32.52 |
| CDY06048 | Canola | plastid | 37.82 | 32.44 |
| CDY14831 | Canola | nucleus | 40.93 | 32.11 |
| HORVU7Hr1G046690.1 | Barley | cytosol, nucleus, plastid | 37.82 | 32.02 |
| TraesCS7B01G195100.1 | Wheat | cytosol, nucleus, plastid | 37.31 | 31.44 |
| CDX92049 | Canola | plastid | 40.41 | 29.21 |
| CDY29956 | Canola | plastid | 41.45 | 29.09 |
| CDX74209 | Canola | plastid | 40.93 | 28.94 |
| CDY19098 | Canola | cytosol | 34.72 | 28.03 |
| CDY47970 | Canola | nucleus | 35.75 | 26.14 |
Protein Annotations
| EnsemblPlants:CDY07237 | EnsemblPlantsGene:GSBRNA2T00123600001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF7 |
| PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY07237 | ProteinID:CDY07237.1 | SEG:seg | UniParc:UPI0004EF460D |
| MapMan:15.5.24 | : | : | : | : | : |
Description
BnaCnng02520D
Coordinates
chrLK031975:+:988459..989839
Molecular Weight (calculated)
21016.9 Da
IEP (calculated)
7.917
GRAVY (calculated)
-0.395
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSTPSGGS PCGACKFLRR KCVAECIFAP YFDAEEGTAH FAAVHKVFGA SNTSKLLLMI PANRRPEAVA TLSYEALARL RDPVYGCVGH IFALQHQVMS
101: LQEELAVVKT HLTTLERLPP QPKQQNNSQT EAASSTKAPL IATADHKKNN VSSSLLHIYG MSQEQQQQQP QEGTEVPNES YLTDGKYRSS SPI
101: LQEELAVVKT HLTTLERLPP QPKQQNNSQT EAASSTKAPL IATADHKKNN VSSSLLHIYG MSQEQQQQQP QEGTEVPNES YLTDGKYRSS SPI
001: MSGSTTGCGG PCGACKFLRR KCVADCVFAP YFDSVEGTSH FTAVHKVFGA SNASKLLMMI PASRRLDAVV TLTYEALARL RDPVYGCVGH IFALQHQVMN
101: LQAELAYVQT QLSTLQGLPP PNSQNNSRTE AASSSNVPLI SSVDSKDNMS SSSSHIPCMS QQQEQEQPKE AIEVPTESVD LSTFFGLENP VDEDGDLNAL
201: AREFFTKYLT GGKYRPSSLI
101: LQAELAYVQT QLSTLQGLPP PNSQNNSRTE AASSSNVPLI SSVDSKDNMS SSSSHIPCMS QQQEQEQPKE AIEVPTESVD LSTFFGLENP VDEDGDLNAL
201: AREFFTKYLT GGKYRPSSLI
Arabidopsis Description
LBD31LOB domain-containing protein 31 [Source:UniProtKB/Swiss-Prot;Acc:O81322]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.