Factsheet for TraesCS7A01G228900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G229900.1	Wheat	cytosol, nucleus, plastid	93.01	93.01
TraesCS7B01G195100.1	Wheat	cytosol, nucleus, plastid	91.7	91.7
HORVU7Hr1G046690.1	Barley	cytosol, nucleus, plastid	80.79	81.14
HORVU0Hr1G020290.1	Barley	cytosol, plastid	42.79	78.4
VIT_15s0048g00840.t01	Wine grape	cytosol, nucleus, plastid	39.74	46.91
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	34.06	46.43
Solyc01g091400.2.1	Tomato	plastid	32.75	44.91
AT2G45410.1	Thale cress	cytosol, nucleus, plastid	36.68	43.98
CDY37038	Canola	mitochondrion	34.06	43.82
CDY57108	Canola	mitochondrion	34.06	43.82
CDY68561	Canola	cytosol, nucleus, plastid	35.37	43.09
KRH76281	Soybean	cytosol, nucleus, plastid	37.12	42.93
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	34.93	42.55
CDX74738	Canola	cytosol, nucleus, plastid	34.93	42.55
KRH65255	Soybean	cytosol, nucleus, plastid	38.43	41.51
AT4G00210.1	Thale cress	nucleus	39.74	41.36
TraesCS4A01G067300.1	Wheat	nucleus	48.03	41.35
PGSC0003DMT400033221	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	23.14	39.85
CDY07237	Canola	nucleus	32.75	38.86
TraesCS4A01G415300.1	Wheat	plastid	30.13	37.3
Bra037322.1-P	Field mustard	nucleus	35.81	36.94
CDY67746	Canola	nucleus	35.81	36.94
TraesCS6A01G398400.1	Wheat	plastid	30.13	33.5
TraesCS4A01G312500.1	Wheat	mitochondrion	29.26	30.59
TraesCS6A01G053700.1	Wheat	nucleus	31.0	29.96
TraesCS3A01G295100.1	Wheat	nucleus	29.69	29.44
TraesCS4A01G415400.1	Wheat	nucleus	37.12	29.41
TraesCS5A01G515300.1	Wheat	cytosol	22.71	29.05
TraesCS5A01G284000.1	Wheat	nucleus	22.27	27.13

Protein Annotations

EnsemblPlants:TraesCS7A01G228900.1	EnsemblPlantsGene:TraesCS7A01G228900	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31529
PANTHER:PTHR31529:SF3	PFAM:PF03195	PFscan:PS50891	SEG:seg	MapMan:15.5.24	:

Description

No Description!

Coordinates

chr7A:+:199237438..199238832

Molecular Weight (calculated)

24621.8 Da

IEP (calculated)

6.652

GRAVY (calculated)

-0.381

Length

229 amino acids

Sequence
(BLAST)

001: MSGSSTSASV SVGGRPSGCS GGPCGACKFL RRKCADDCIF APYFDSEQGV EHFTAVHKVF GASNVSKILN QAPPHKRLDA AITVCYEAKA RLRDPIYGCV
101: GDIFALQQRV ANLQAEVAFL QAHLTTPQQP SPPPFPSPPY IPMTTEFSIS ELASLSNVPN TVELSSLFDP SMQWAFQQQH QQPYGQTGEG SAGRGNTNSN
201: GDDLQALARE LLDRRSTGLT PQQPSNTQF

Best Arabidopsis Sequence Match ( AT2G45420.1 )
(BLAST)

001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR

Arabidopsis Description

LBD18LBD18 [Source:UniProtKB/TrEMBL;Acc:A0A178VVX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.