Factsheet for Bra037322.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07237	Canola	nucleus	86.94	100.0
CDY67746	Canola	nucleus	100.0	100.0
AT4G00210.1	Thale cress	nucleus	72.07	72.73
Solyc01g091400.2.1	Tomato	plastid	40.09	53.29
VIT_15s0048g00840.t01	Wine grape	cytosol, nucleus, plastid	45.5	52.06
HORVU0Hr1G020290.1	Barley	cytosol, plastid	28.83	51.2
PGSC0003DMT400033221	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	30.63	51.13
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	42.34	50.0
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	37.39	49.4
KRH65255	Soybean	cytosol, nucleus, plastid	45.95	48.11
KRH76281	Soybean	cytosol, nucleus, plastid	42.79	47.98
Bra001087.1-P	Field mustard	plastid	23.42	43.33
Bra037323.1-P	Field mustard	plastid	42.34	41.96
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	41.89	41.52
Bra009161.1-P	Field mustard	nucleus	31.53	38.25
Bra004910.1-P	Field mustard	plastid	42.34	37.15
Bra040311.1-P	Field mustard	nucleus	42.79	36.68
TraesCS7D01G229900.1	Wheat	cytosol, nucleus, plastid	37.39	36.24
Bra000257.1-P	Field mustard	nucleus	38.74	36.13
HORVU7Hr1G046690.1	Barley	cytosol, nucleus, plastid	36.94	35.96
TraesCS7A01G228900.1	Wheat	cytosol, nucleus, plastid	36.94	35.81
Bra004693.1-P	Field mustard	plastid	39.19	35.66
Bra025217.1-P	Field mustard	cytosol	17.12	35.51
Bra034867.1-P	Field mustard	plastid	27.48	35.47
Bra018260.1-P	Field mustard	nucleus	30.63	35.23
Bra014581.1-P	Field mustard	mitochondrion, nucleus	34.68	35.16
Bra016877.1-P	Field mustard	nucleus	38.29	34.55
TraesCS7B01G195100.1	Wheat	cytosol, nucleus, plastid	35.59	34.5
Bra007385.1-P	Field mustard	plastid	32.88	32.44
Bra036436.1-P	Field mustard	plastid	36.49	29.45
Bra021737.1-P	Field mustard	cytosol	31.08	28.87
Bra016876.1-P	Field mustard	nucleus	33.33	28.03
Bra032938.1-P	Field mustard	nucleus	20.27	15.31

Protein Annotations

EnsemblPlants:Bra037322.1	EnsemblPlants:Bra037322.1-P	EnsemblPlantsGene:Bra037322	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF7	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002541B0E	UniProt:M4F8B0
MapMan:15.5.24	:	:	:	:	:

Description

AT4G00210 (E=4e-076) LBD31 | LBD31 (LOB DOMAIN-CONTAINING PROTEIN 31)

Coordinates

chrA09:+:1073182..1074567

Molecular Weight (calculated)

24235.7 Da

IEP (calculated)

6.621

GRAVY (calculated)

-0.378

Length

222 amino acids

Sequence
(BLAST)

001: MSGSTPSGGS PCGACKFLRR KCVAECIFAP YFDAEEGTAH FAAVHKVFGA SNTSKLLLMI PANRRPEAVA TLSYEALARL RDPVYGCVGH IFALQHQVMS
101: LQEELAVVKT HLTTLERLPP QPKQQNNSQT EAASSTKAPL IATADHKKNN VSSSLLHIYG MSQEQQQQQP QEGTEVPNES VDFSTLLGLE DPLDRDGDLN
201: TLAREFVSKY LTDGKYRSSS PI

Best Arabidopsis Sequence Match ( AT4G00210.1 )
(BLAST)

001: MSGSTTGCGG PCGACKFLRR KCVADCVFAP YFDSVEGTSH FTAVHKVFGA SNASKLLMMI PASRRLDAVV TLTYEALARL RDPVYGCVGH IFALQHQVMN
101: LQAELAYVQT QLSTLQGLPP PNSQNNSRTE AASSSNVPLI SSVDSKDNMS SSSSHIPCMS QQQEQEQPKE AIEVPTESVD LSTFFGLENP VDEDGDLNAL
201: AREFFTKYLT GGKYRPSSLI

Arabidopsis Description

LBD31LOB domain-containing protein 31 [Source:UniProtKB/Swiss-Prot;Acc:O81322]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.