Factsheet for Bra009161.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
extracellular 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98901	Canola	nucleus	98.91	98.91
CDY60434	Canola	nucleus	96.72	96.72
AT5G06080.1	Thale cress	mitochondrion, nucleus	75.96	78.53
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	36.07	39.29
VIT_13s0019g02060.t01	Wine grape	mitochondrion, nucleus	46.45	38.81
KRH73061	Soybean	mitochondrion, nucleus	45.36	37.73
PGSC0003DMT400097267	Potato	cytosol, mitochondrion, plastid	31.69	37.42
Bra001087.1-P	Field mustard	plastid	24.04	36.67
KRH15078	Soybean	plastid	45.9	36.36
Bra018260.1-P	Field mustard	nucleus	37.7	35.75
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	36.61	35.64
Bra014581.1-P	Field mustard	mitochondrion, nucleus	41.53	34.7
Bra007385.1-P	Field mustard	plastid	40.98	33.33
Bra025217.1-P	Field mustard	cytosol	18.58	31.78
Bra037322.1-P	Field mustard	nucleus	38.25	31.53
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	37.7	30.8
Bra037323.1-P	Field mustard	plastid	37.16	30.36
Bra000257.1-P	Field mustard	nucleus	38.8	29.83
Bra004693.1-P	Field mustard	plastid	39.34	29.51
Bra021737.1-P	Field mustard	cytosol	38.25	29.29
Bra016877.1-P	Field mustard	nucleus	39.34	29.27
Bra004910.1-P	Field mustard	plastid	39.89	28.85
Bra040311.1-P	Field mustard	nucleus	39.34	27.8
Bra034867.1-P	Field mustard	plastid	25.68	27.33
Bra016876.1-P	Field mustard	nucleus	36.61	25.38
Bra036436.1-P	Field mustard	plastid	35.52	23.64
Bra032938.1-P	Field mustard	nucleus	22.95	14.29

Protein Annotations

EnsemblPlants:Bra009161.1	EnsemblPlants:Bra009161.1-P	EnsemblPlantsGene:Bra009161	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF12	PFAM:PF03195	PFscan:PS50891	UniParc:UPI0002544E22	UniProt:M4CY64	MapMan:15.5.24

Description

AT5G06080 (E=3e-078) LBD33 | LBD33 (LOB DOMAIN-CONTAINING PROTEIN 33)

Coordinates

chrA10:-:15474429..15475061

Molecular Weight (calculated)

20625.4 Da

IEP (calculated)

6.150

GRAVY (calculated)

-0.183

Length

183 amino acids

Sequence
(BLAST)

001: MAAHGSSCGA CKFLRRKCNI DCVFSPYFSY EQASSHFSAV HKVFGASNVS KHLLSLPLHQ RSAAAITISY EALSRMCDPV YGCVAHIFAL QQQVMTLQEE
101: IEFLGTHMAN LSNTTQSRSQ PNDMPEFLNQ MTMDTTTGFI DQTVLNNDVG INCIEGFFTN PEEVLVNHPW FQNMDHYYYA PQH

Best Arabidopsis Sequence Match ( AT5G06080.1 )
(BLAST)

001: MASHGSSCGA CKFLRRKCNR DCVFSPYFSY EQASSHFAAV HKVFGASNVS KHLLHLPQHQ RNIAAITISY EALSRMRDPV YGCVAHIFAL HQQVVTLQEE
101: IEFLGSQMKN FSYSNQNGSQ LNNIPEFVNQ MTMATTNFVD ESVLNNADGR NCYDGFFTNS EEMLVNHQWL QNMDYYY

Arabidopsis Description

LBD33LOB domain-containing protein 33 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS8]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.