Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400033253 | Potato | plastid | 29.68 | 33.09 |
| AT5G06080.1 | Thale cress | mitochondrion, nucleus | 37.42 | 32.77 |
| Bra009161.1-P | Field mustard | nucleus | 37.42 | 31.69 |
| CDX98901 | Canola | nucleus | 36.77 | 31.15 |
| CDY60434 | Canola | nucleus | 36.77 | 31.15 |
| PGSC0003DMT400051680 | Potato | nucleus | 35.48 | 28.21 |
| KRH73061 | Soybean | mitochondrion, nucleus | 38.06 | 26.82 |
| KRH15078 | Soybean | plastid | 37.42 | 25.11 |
| PGSC0003DMT400033221 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 21.29 | 24.81 |
| VIT_13s0019g02060.t01 | Wine grape | mitochondrion, nucleus | 34.84 | 24.66 |
| PGSC0003DMT400025135 | Potato | nucleus | 34.84 | 24.43 |
| PGSC0003DMT400071281 | Potato | plastid | 27.1 | 23.73 |
| PGSC0003DMT400025142 | Potato | nucleus | 36.13 | 22.86 |
| PGSC0003DMT400057829 | Potato | nucleus | 33.55 | 21.58 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400097267 | EnsemblPlantsGene:PGSC0003DMG400046838 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31529 |
| PANTHER:PTHR31529:SF6 | PFAM:PF03195 | PFscan:PS50891 | PGSC:PGSC0003DMG400046838 | SEG:seg | UniParc:UPI0002967382 |
| UniProt:M1E093 | MapMan:15.5.24 | : | : | : | : |
Description
LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400046838]
Coordinates
chr6:-:25096269..25096879
Molecular Weight (calculated)
17493.9 Da
IEP (calculated)
5.487
GRAVY (calculated)
-0.051
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGPAGSSCG ACKFLRRKCS TECIFVPYFI YEEASKDFSA VHKVFRASNV SKLLLHLPLH YRSDAALTMS SSLIEEIEIM ENQMASFQGE VPMHNMNINT
101: LQYSLECNNM NLENTHVNHS ITSPSSANEA FAMHMISGFF IPFFDLDISE RFFEG
101: LQYSLECNNM NLENTHVNHS ITSPSSANEA FAMHMISGFF IPFFDLDISE RFFEG
001: MASHGSSCGA CKFLRRKCNR DCVFSPYFSY EQASSHFAAV HKVFGASNVS KHLLHLPQHQ RNIAAITISY EALSRMRDPV YGCVAHIFAL HQQVVTLQEE
101: IEFLGSQMKN FSYSNQNGSQ LNNIPEFVNQ MTMATTNFVD ESVLNNADGR NCYDGFFTNS EEMLVNHQWL QNMDYYY
101: IEFLGSQMKN FSYSNQNGSQ LNNIPEFVNQ MTMATTNFVD ESVLNNADGR NCYDGFFTNS EEMLVNHQWL QNMDYYY
Arabidopsis Description
LBD33LOB domain-containing protein 33 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS8]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.