Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60434 | Canola | nucleus | 78.53 | 75.96 |
| CDX98901 | Canola | nucleus | 78.53 | 75.96 |
| Bra009161.1-P | Field mustard | nucleus | 78.53 | 75.96 |
| VIT_13s0019g02060.t01 | Wine grape | mitochondrion, nucleus | 49.72 | 40.18 |
| AT3G26660.1 | Thale cress | mitochondrion | 26.55 | 38.84 |
| AT3G26620.1 | Thale cress | mitochondrion | 26.55 | 38.84 |
| KRH73061 | Soybean | mitochondrion, nucleus | 48.02 | 38.64 |
| AT3G58190.1 | Thale cress | plastid | 46.33 | 37.61 |
| PGSC0003DMT400097267 | Potato | cytosol, mitochondrion, plastid | 32.77 | 37.42 |
| KRH15078 | Soybean | plastid | 48.02 | 36.8 |
| AT2G31310.1 | Thale cress | nucleus | 38.98 | 36.7 |
| AT2G45410.1 | Thale cress | cytosol, nucleus, plastid | 36.16 | 33.51 |
| AT4G00220.1 | Thale cress | plastid | 40.11 | 31.14 |
| AT4G00210.1 | Thale cress | nucleus | 38.42 | 30.91 |
| AT3G11090.1 | Thale cress | mitochondrion | 28.25 | 30.3 |
| AT2G42430.1 | Thale cress | plastid | 41.81 | 30.2 |
| AT2G42440.1 | Thale cress | mitochondrion, nucleus | 41.24 | 29.92 |
| AT2G45420.1 | Thale cress | plastid | 42.37 | 28.63 |
| AT3G03760.1 | Thale cress | nucleus, plastid | 40.11 | 26.01 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:830495 | UniProt:A0A178UJQ4 | EMBL:AB473857 | ProteinID:AED90962.1 | ArrayExpress:AT5G06080 |
| EnsemblPlantsGene:AT5G06080 | RefSeq:AT5G06080 | TAIR:AT5G06080 | RefSeq:AT5G06080-TAIR-G | EnsemblPlants:AT5G06080.1 | TAIR:AT5G06080.1 |
| ProteinID:BAA98197.1 | GO:GO:0008150 | InterPro:IPR004883 | Symbol:LBD33 | InterPro:LOB | RefSeq:NP_196226.1 |
| ProteinID:OAO93835.1 | PFAM:PF03195 | PFscan:PS50891 | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF12 | UniProt:Q9LHS8 |
| UniParc:UPI000009FAAE | : | : | : | : | : |
Description
LBD33LOB domain-containing protein 33 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS8]
Coordinates
chr5:-:1830671..1831467
Molecular Weight (calculated)
20243.8 Da
IEP (calculated)
6.779
GRAVY (calculated)
-0.350
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MASHGSSCGA CKFLRRKCNR DCVFSPYFSY EQASSHFAAV HKVFGASNVS KHLLHLPQHQ RNIAAITISY EALSRMRDPV YGCVAHIFAL HQQVVTLQEE
101: IEFLGSQMKN FSYSNQNGSQ LNNIPEFVNQ MTMATTNFVD ESVLNNADGR NCYDGFFTNS EEMLVNHQWL QNMDYYY
101: IEFLGSQMKN FSYSNQNGSQ LNNIPEFVNQ MTMATTNFVD ESVLNNADGR NCYDGFFTNS EEMLVNHQWL QNMDYYY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.