Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 5
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07236 | Canola | plastid | 83.77 | 85.27 |
| Bra008514.1-P | Field mustard | cytosol, nucleus, plastid | 83.77 | 85.27 |
| Bra037323.1-P | Field mustard | plastid | 83.77 | 85.27 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 83.33 | 84.82 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 82.89 | 84.38 |
| PGSC0003DMT400033253 | Potato | plastid | 38.16 | 62.59 |
| VIT_15s0048g00830.t01 | Wine grape | nucleus | 63.16 | 57.37 |
| GSMUA_Achr5P11330_001 | Banana | plastid | 60.09 | 56.85 |
| GSMUA_Achr2P11240_001 | Banana | plastid | 58.33 | 56.36 |
| AT2G45420.1 | Thale cress | plastid | 61.84 | 53.82 |
| GSMUA_Achr1P02520_001 | Banana | cytosol, nucleus, plastid | 56.14 | 52.89 |
| Solyc01g091420.1.1 | Tomato | plastid | 62.72 | 52.77 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 57.89 | 51.36 |
| HORVU4Hr1G063160.1 | Barley | plastid | 57.46 | 51.17 |
| Zm00001d028413_P001 | Maize | plastid | 58.33 | 51.15 |
| TraesCS4B01G224600.1 | Wheat | plastid | 57.46 | 50.0 |
| TraesCS4D01G225200.1 | Wheat | nucleus | 57.02 | 50.0 |
| Os03t0246900-00 | Rice | nucleus | 59.65 | 49.45 |
| Zm00001d047921_P001 | Maize | plastid | 57.02 | 49.06 |
| TraesCS4A01G067300.1 | Wheat | nucleus | 57.02 | 48.87 |
| Zm00001d030364_P001 | Maize | plastid | 52.19 | 48.57 |
| EER92557 | Sorghum | nucleus | 58.33 | 48.19 |
| KXG38649 | Sorghum | plastid | 54.82 | 48.08 |
| Os10t0162600-00 | Rice | nucleus | 55.26 | 46.84 |
| AT2G45410.1 | Thale cress | cytosol, nucleus, plastid | 38.6 | 46.07 |
| AT4G00210.1 | Thale cress | nucleus | 43.42 | 45.0 |
| AT2G31310.1 | Thale cress | nucleus | 34.65 | 42.02 |
| AT3G26620.1 | Thale cress | mitochondrion | 21.93 | 41.32 |
| AT3G26660.1 | Thale cress | mitochondrion | 21.93 | 41.32 |
| AT5G06080.1 | Thale cress | mitochondrion, nucleus | 31.14 | 40.11 |
| AT3G58190.1 | Thale cress | plastid | 37.28 | 38.99 |
| AT2G42430.1 | Thale cress | plastid | 38.16 | 35.51 |
| AT3G03760.1 | Thale cress | nucleus, plastid | 41.67 | 34.8 |
| GSMUA_Achr4P28810_001 | Banana | nucleus | 44.74 | 34.58 |
| AT3G11090.1 | Thale cress | mitochondrion | 25.0 | 34.55 |
| AT2G42440.1 | Thale cress | mitochondrion, nucleus | 36.4 | 34.02 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:828084 | ProteinID:AAC19300.1 | EMBL:AB473852 | ProteinID:AEE81839.1 | EMBL:AF432232 |
| ArrayExpress:AT4G00220 | EnsemblPlantsGene:AT4G00220 | RefSeq:AT4G00220 | TAIR:AT4G00220 | RefSeq:AT4G00220-TAIR-G | EnsemblPlants:AT4G00220.1 |
| TAIR:AT4G00220.1 | EMBL:BT026407 | ProteinID:CAB80780.1 | EMBL:DQ446787 | EMBL:DQ653168 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0010089 | GO:GO:0010199 |
| InterPro:IPR004883 | Symbol:LBD30 | InterPro:LOB | RefSeq:NP_191933.1 | UniProt:O81323 | PFAM:PF03195 |
| PO:PO:0000019 | PO:PO:0000229 | PO:PO:0000230 | PO:PO:0000290 | PO:PO:0004704 | PO:PO:0004705 |
| PO:PO:0007611 | PO:PO:0009046 | PO:PO:0020003 | PFscan:PS50891 | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF3 |
| UniParc:UPI000012E247 | SEG:seg | : | : | : | : |
Description
LBD30LOB domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:O81323]
Coordinates
chr4:+:89908..92255
Molecular Weight (calculated)
23969.4 Da
IEP (calculated)
7.250
GRAVY (calculated)
-0.111
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSGNPSSS SGGGGGPCGA CKFLRRKCVA GCIFAPYFDS EQGAAHFAAV HKVFGASNVS KLLHHVPEHK RPDAVVSICF EAQARLRDPI YGCVSHIVSL
101: QQQVVSLQTE LSYLQAHLAT LELPQPQPPQ VPVSSSGSLQ ALSITDLPTI SPSVYDLSSI FEPVMSSTWA MQQQPRPSDH LFGVPSSSNM GGGGELQALA
201: REFIHGGQMP AQPSPGTSGS ASSVIKRE
101: QQQVVSLQTE LSYLQAHLAT LELPQPQPPQ VPVSSSGSLQ ALSITDLPTI SPSVYDLSSI FEPVMSSTWA MQQQPRPSDH LFGVPSSSNM GGGGELQALA
201: REFIHGGQMP AQPSPGTSGS ASSVIKRE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.