Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00220.1 | CDY07237 | AT4G00210.1 | 22822207 |
| AT4G00220.1 | CDY67746 | AT4G00210.1 | 22822207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037323.1-P | Field mustard | plastid | 100.0 | 100.0 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 87.05 | 87.05 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 86.61 | 86.61 |
| AT4G00220.1 | Thale cress | plastid | 85.27 | 83.77 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 32.14 | 69.9 |
| PGSC0003DMT400033253 | Potato | plastid | 37.95 | 61.15 |
| VIT_15s0048g00830.t01 | Wine grape | nucleus | 62.5 | 55.78 |
| GSMUA_Achr5P11330_001 | Banana | plastid | 59.82 | 55.6 |
| GSMUA_Achr2P11240_001 | Banana | plastid | 57.59 | 54.66 |
| GSMUA_Achr1P02520_001 | Banana | cytosol, nucleus, plastid | 56.7 | 52.48 |
| CDY18932 | Canola | plastid | 58.48 | 52.19 |
| CDY68635 | Canola | nucleus | 59.82 | 51.74 |
| CDY57109 | Canola | plastid | 59.38 | 51.15 |
| Solyc01g091420.1.1 | Tomato | plastid | 61.61 | 50.92 |
| Zm00001d028413_P001 | Maize | plastid | 58.93 | 50.77 |
| HORVU4Hr1G063160.1 | Barley | plastid | 57.14 | 50.0 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 57.14 | 49.81 |
| TraesCS4B01G224600.1 | Wheat | plastid | 57.59 | 49.24 |
| TraesCS4D01G225200.1 | Wheat | nucleus | 57.14 | 49.23 |
| Os03t0246900-00 | Rice | nucleus | 59.38 | 48.36 |
| TraesCS4A01G067300.1 | Wheat | nucleus | 57.14 | 48.12 |
| Zm00001d047921_P001 | Maize | plastid | 56.7 | 47.92 |
| Zm00001d030364_P001 | Maize | plastid | 52.23 | 47.76 |
| KXG38649 | Sorghum | plastid | 55.36 | 47.69 |
| EER92557 | Sorghum | nucleus | 57.59 | 46.74 |
| Os10t0162600-00 | Rice | nucleus | 55.36 | 46.1 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 37.95 | 45.21 |
| CDY07237 | Canola | nucleus | 38.84 | 45.08 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 24.11 | 45.0 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 37.05 | 44.15 |
| CDY15375 | Canola | nucleus | 35.27 | 43.89 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 22.77 | 43.59 |
| CDY57108 | Canola | mitochondrion | 34.38 | 43.26 |
| CDY37038 | Canola | mitochondrion | 33.93 | 42.7 |
| CDY67746 | Canola | nucleus | 41.96 | 42.34 |
| CDY10793 | Canola | nucleus | 33.93 | 42.22 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 22.77 | 42.15 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 22.77 | 42.15 |
| CDY24760 | Canola | nucleus | 33.48 | 41.67 |
| CDY28537 | Canola | mitochondrion | 21.88 | 40.5 |
| CDY48982 | Canola | mitochondrion | 21.43 | 39.67 |
| CDY60434 | Canola | nucleus | 31.25 | 38.25 |
| CDX98901 | Canola | nucleus | 30.8 | 37.7 |
| CDY14832 | Canola | mitochondrion, nucleus | 33.04 | 37.19 |
| CDX71962 | Canola | plastid | 35.27 | 35.75 |
| CDX88974 | Canola | mitochondrion, nucleus | 34.82 | 35.62 |
| CDY00547 | Canola | mitochondrion, nucleus | 34.38 | 35.48 |
| CDY06048 | Canola | plastid | 35.27 | 35.11 |
| CDY22562 | Canola | nucleus | 36.61 | 34.45 |
| CDY64515 | Canola | nucleus, plastid | 37.05 | 34.02 |
| CDY19098 | Canola | cytosol | 36.16 | 33.89 |
| CDY14831 | Canola | nucleus | 37.05 | 33.74 |
| CDY70198 | Canola | nucleus | 36.61 | 33.61 |
| CDY47969 | Canola | nucleus | 36.61 | 33.33 |
| CDX92049 | Canola | plastid | 39.29 | 32.96 |
| CDX74209 | Canola | plastid | 39.73 | 32.6 |
| GSMUA_Achr4P28810_001 | Banana | nucleus | 42.41 | 32.2 |
| CDY29956 | Canola | plastid | 39.29 | 32.0 |
| CDY00994 | Canola | plastid | 24.11 | 31.58 |
| CDY08551 | Canola | plastid | 24.11 | 31.4 |
| CDY47970 | Canola | nucleus | 32.59 | 27.65 |
Protein Annotations
| EnsemblPlants:CDY07236 | EnsemblPlantsGene:GSBRNA2T00123599001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF3 |
| PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY07236 | ProteinID:CDY07236.1 | SEG:seg | UniParc:UPI0002541B0D |
| MapMan:15.5.24 | : | : | : | : | : |
Description
BnaCnng02510D
Coordinates
chrLK031975:-:982679..984872
Molecular Weight (calculated)
23590.1 Da
IEP (calculated)
6.925
GRAVY (calculated)
-0.054
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSGSPGSS CGGGPCGACK FLRRKCVAGC IFAPYFDSEQ GAAHFAAVHK VFGASNVSKL LQHVPEHKRA DAVVSICFEA QARLRDPIYG CVSHIVSLQQ
101: QVVSLQTELS YVQAHLATLE LPQPPPAPVT SSGSPPPLSI SDLPTITPSL YELSPIFEPM SSTWTMQQQP RPFDHLFGVP SSSTIGGSSE LQALARDFLH
201: GGQIPADLPP PGTGGSAPTV VKRE
101: QVVSLQTELS YVQAHLATLE LPQPPPAPVT SSGSPPPLSI SDLPTITPSL YELSPIFEPM SSTWTMQQQP RPFDHLFGVP SSSTIGGSSE LQALARDFLH
201: GGQIPADLPP PGTGGSAPTV VKRE
001: MSSSGNPSSS SGGGGGPCGA CKFLRRKCVA GCIFAPYFDS EQGAAHFAAV HKVFGASNVS KLLHHVPEHK RPDAVVSICF EAQARLRDPI YGCVSHIVSL
101: QQQVVSLQTE LSYLQAHLAT LELPQPQPPQ VPVSSSGSLQ ALSITDLPTI SPSVYDLSSI FEPVMSSTWA MQQQPRPSDH LFGVPSSSNM GGGGELQALA
201: REFIHGGQMP AQPSPGTSGS ASSVIKRE
101: QQQVVSLQTE LSYLQAHLAT LELPQPQPPQ VPVSSSGSLQ ALSITDLPTI SPSVYDLSSI FEPVMSSTWA MQQQPRPSDH LFGVPSSSNM GGGGELQALA
201: REFIHGGQMP AQPSPGTSGS ASSVIKRE
Arabidopsis Description
LBD30LOB domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:O81323]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.