Factsheet for GSMUA_Achr5P11330_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P02520_001	Banana	cytosol, nucleus, plastid	87.14	86.78
PGSC0003DMT400033253	Potato	plastid	44.4	76.98
GSMUA_Achr2P11240_001	Banana	plastid	74.27	75.85
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	78.84	73.93
VIT_15s0048g00830.t01	Wine grape	nucleus	74.69	71.71
KRH65254	Soybean	plastid	63.9	61.35
CDY18932	Canola	plastid	63.07	60.56
Solyc01g091420.1.1	Tomato	plastid	68.05	60.52
CDY54923	Canola	cytosol, nucleus, plastid	56.02	60.27
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	56.02	60.27
AT4G00220.1	Thale cress	plastid	56.85	60.09
KRH00577	Soybean	plastid	58.09	59.83
CDY07236	Canola	plastid	55.6	59.82
CDY69735	Canola	cytosol, nucleus, plastid	55.6	59.82
Bra037323.1-P	Field mustard	plastid	55.6	59.82
Bra004910.1-P	Field mustard	plastid	62.66	59.68
KRH76282	Soybean	plastid	61.0	59.51
AT2G45420.1	Thale cress	plastid	63.9	58.78
Bra040311.1-P	Field mustard	nucleus	63.07	58.69
CDY68635	Canola	nucleus	62.66	58.3
CDY57109	Canola	plastid	62.66	58.08
KRH40590	Soybean	plastid	55.6	57.76
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	36.93	46.11
GSMUA_Achr3P27340_001	Banana	mitochondrion, plastid	33.61	44.26
GSMUA_Achr4P25190_001	Banana	mitochondrion	39.0	43.93
GSMUA_Achr1P01360_001	Banana	mitochondrion, nucleus, plastid	38.59	43.46
GSMUA_Achr1P06580_001	Banana	mitochondrion	37.34	43.06
GSMUA_Achr10P...	Banana	mitochondrion	38.59	42.47
GSMUA_Achr11P...	Banana	mitochondrion	36.93	42.18
GSMUA_AchrUn_...	Banana	mitochondrion	40.25	41.81
GSMUA_Achr1P01350_001	Banana	nucleus	34.44	41.29
GSMUA_AchrUn_...	Banana	mitochondrion	37.34	39.82
GSMUA_Achr8P14330_001	Banana	mitochondrion	38.59	39.74
GSMUA_Achr4P28810_001	Banana	nucleus	47.72	38.98
GSMUA_Achr11P...	Banana	mitochondrion	21.58	33.12

Protein Annotations

EnsemblPlants:GSMUA_Achr5P11330_001	EnsemblPlants:GSMUA_Achr5T11330_001	EnsemblPlantsGene:GSMUA_Achr5G11330_001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF3	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002951B7F	UniProt:M0SXL2
MapMan:15.5.24	:	:	:	:	:

Description

LOB domain-containing protein 30 [Source:GMGC_GENE;Acc:GSMUA_Achr5G11330_001]

Coordinates

chr5:+:8118385..8119528

Molecular Weight (calculated)

24692.5 Da

IEP (calculated)

7.843

GRAVY (calculated)

0.005

Length

241 amino acids

Sequence
(BLAST)

001: MSGKSPSVGV LGGGSGGAGG GGGGGSGGGG SAGGGTGPCG ACKFLRRKCV TGCIFAPYFD SEQGAAHFAA VHKVFGASNV SKLLLHIPAH KRLDAVVTIC
101: YEAQARLRDP VYGCVAHIFA LQQQVVNLQA ELSYLQAHLA TLELPSPPPP PPPPSLVASM PFSISDLPSA ANLPSTVDLS ALFDPLVQPL WPLQQQQLQL
201: STSTRNLSES SGFGGGDLQA LARELLDRQR TATSEPPPVS K

Best Arabidopsis Sequence Match ( AT2G45420.1 )
(BLAST)

001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR

Arabidopsis Description

LBD18LBD18 [Source:UniProtKB/TrEMBL;Acc:A0A178VVX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.