Factsheet for GSMUA_Achr1P02520_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P11330_001	Banana	plastid	86.78	87.14
PGSC0003DMT400033253	Potato	plastid	43.8	76.26
GSMUA_Achr2P11240_001	Banana	plastid	70.25	72.03
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	76.03	71.6
VIT_15s0048g00830.t01	Wine grape	nucleus	72.31	69.72
KRH65254	Soybean	plastid	61.16	58.96
Solyc01g091420.1.1	Tomato	plastid	65.29	58.3
KRH00577	Soybean	plastid	56.2	58.12
KRH76282	Soybean	plastid	59.09	57.89
CDY18932	Canola	plastid	59.92	57.77
Bra004910.1-P	Field mustard	plastid	59.92	57.31
KRH40590	Soybean	plastid	54.55	56.9
Bra037323.1-P	Field mustard	plastid	52.48	56.7
CDY07236	Canola	plastid	52.48	56.7
AT4G00220.1	Thale cress	plastid	52.89	56.14
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	51.65	55.8
CDY54923	Canola	cytosol, nucleus, plastid	51.65	55.8
AT2G45420.1	Thale cress	plastid	60.33	55.73
CDY69735	Canola	cytosol, nucleus, plastid	51.24	55.36
CDY57109	Canola	plastid	59.09	55.0
Bra040311.1-P	Field mustard	nucleus	58.26	54.44
CDY68635	Canola	nucleus	57.85	54.05
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	36.36	45.6
GSMUA_Achr3P27340_001	Banana	mitochondrion, plastid	33.06	43.72
GSMUA_Achr4P25190_001	Banana	mitochondrion	38.43	43.46
GSMUA_Achr1P01360_001	Banana	mitochondrion, nucleus, plastid	38.02	42.99
GSMUA_Achr11P...	Banana	mitochondrion	36.78	42.18
GSMUA_Achr1P06580_001	Banana	mitochondrion	36.36	42.11
GSMUA_Achr1P01350_001	Banana	nucleus	34.71	41.79
GSMUA_Achr10P...	Banana	mitochondrion	37.6	41.55
GSMUA_AchrUn_...	Banana	mitochondrion	39.26	40.95
GSMUA_AchrUn_...	Banana	mitochondrion	37.19	39.82
GSMUA_Achr8P14330_001	Banana	mitochondrion	37.19	38.46
GSMUA_Achr4P28810_001	Banana	nucleus	45.87	37.63
GSMUA_Achr11P...	Banana	mitochondrion	21.9	33.76

Protein Annotations

EnsemblPlants:GSMUA_Achr1P02520_001	EnsemblPlants:GSMUA_Achr1T02520_001	EnsemblPlantsGene:GSMUA_Achr1G02520_001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF3	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI00029615AA	UniProt:M0RWG0
MapMan:15.5.24	:	:	:	:	:

Description

LOB domain-containing protein 30 [Source:GMGC_GENE;Acc:GSMUA_Achr1G02520_001]

Coordinates

chr1:-:2089011..2089834

Molecular Weight (calculated)

24944.7 Da

IEP (calculated)

7.472

GRAVY (calculated)

-0.059

Length

242 amino acids

Sequence
(BLAST)

001: MSGNPSPSIE GATGGGSGGA GGGGGTSGGG GSAGGGSGPC GACKFLRRKC MAGCIFAPYF DSEQGAAHFA AVHKVFGASN VSKLLLHIPA HKRLDAAVTI
101: CYEAQARLRD PVYGCVAHIF ALQQQVVNLQ AELSYLQAHL ATLELPSPPP PLPPPLVVAP IPFAISDLPS AANLPTAVDL STLFNPLVQP AWTLQQQQQQ
201: LSTSTRSPCE RSGFGGGDLQ ALARELLDRH RMATSEPPPD SR

Best Arabidopsis Sequence Match ( AT4G00220.1 )
(BLAST)

001: MSSSGNPSSS SGGGGGPCGA CKFLRRKCVA GCIFAPYFDS EQGAAHFAAV HKVFGASNVS KLLHHVPEHK RPDAVVSICF EAQARLRDPI YGCVSHIVSL
101: QQQVVSLQTE LSYLQAHLAT LELPQPQPPQ VPVSSSGSLQ ALSITDLPTI SPSVYDLSSI FEPVMSSTWA MQQQPRPSDH LFGVPSSSNM GGGGELQALA
201: REFIHGGQMP AQPSPGTSGS ASSVIKRE

Arabidopsis Description

LBD30LOB domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:O81323]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.