Factsheet for GSMUA_AchrUn_randomP23710_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P25190_001	Banana	mitochondrion	72.41	78.5
VIT_07s0005g03020.t01	Wine grape	mitochondrion, nucleus	57.76	57.76
GSMUA_Achr1P06580_001	Banana	mitochondrion	51.29	56.94
KRH19530	Soybean	mitochondrion, nucleus	57.76	56.54
KRG95645	Soybean	mitochondrion, nucleus	50.0	55.77
KRH67348	Soybean	nucleus	50.86	55.66
GSMUA_Achr10P...	Banana	mitochondrion	52.16	55.25
GSMUA_Achr11P...	Banana	mitochondrion	50.0	54.98
KRH32157	Soybean	mitochondrion, nucleus	56.47	54.81
GSMUA_Achr1P01360_001	Banana	mitochondrion, nucleus, plastid	49.57	53.74
GSMUA_Achr8P14330_001	Banana	mitochondrion	52.16	51.71
PGSC0003DMT400025142	Potato	nucleus	53.45	50.61
GSMUA_AchrUn_...	Banana	mitochondrion	49.14	50.44
Solyc09g066270.2.1	Tomato	nucleus	52.59	50.0
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	40.95	49.22
EER92849	Sorghum	mitochondrion	50.43	47.76
Zm00001d027679_P001	Maize	cytosol, nucleus	50.0	47.54
GSMUA_Achr3P27340_001	Banana	mitochondrion, plastid	37.07	46.99
GSMUA_Achr1P01350_001	Banana	nucleus	40.09	46.27
Zm00001d048401_P001	Maize	nucleus	45.69	45.3
Os03t0149100-01	Rice	mitochondrion	50.43	45.17
GSMUA_Achr2P11240_001	Banana	plastid	41.38	40.68
GSMUA_Achr5P11330_001	Banana	plastid	41.81	40.25
GSMUA_Achr1P02520_001	Banana	cytosol, nucleus, plastid	40.95	39.26
TraesCS4A01G415400.1	Wheat	nucleus	48.28	38.75
HORVU4Hr1G080160.1	Barley	plastid	47.41	38.73
TraesCS4D01G312800.1	Wheat	plastid	47.41	38.46
TraesCS4B01G316200.1	Wheat	nucleus, plastid	47.41	38.19
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	40.52	36.58
GSMUA_Achr11P...	Banana	mitochondrion	21.55	31.85
GSMUA_Achr4P28810_001	Banana	nucleus	37.07	29.15

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP23710_001	EnsemblPlants:GSMUA_AchrUn_randomT23710_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG23710_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31529	PANTHER:PTHR31529:SF2	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000296B32D
UniProt:M0UBS9	MapMan:15.5.24	:	:	:	:

Description

DUF260 domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG23710_001]

Coordinates

chrchrUn_random:+:116610750..116611612

Molecular Weight (calculated)

25325.7 Da

IEP (calculated)

6.293

GRAVY (calculated)

-0.331

Length

232 amino acids

Sequence
(BLAST)

001: MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNFS KLLLLLPLAD RSEAAVTISY EAQARLQDPV YGCVAHIFAL QQQVVNLQAQ
101: LASLKAQAAQ GLGSGSATNQ TPQEDKHSPF QQDGQRFFQT GDGRMLPPFS SISSMSVENM NNYSSGPSDP NYLQSSQEYD RHYEISDDHM SFGTEGGGFA
201: MASPDMQAST WRSAYHDMED LQSIALAYLG RP

Best Arabidopsis Sequence Match ( AT3G58190.1 )
(BLAST)

001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS

Arabidopsis Description

LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.