Factsheet for GSMUA_Achr11P04980_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83633	Canola	cytosol, mitochondrion, nucleus, plastid	39.49	52.99
CDY28537	Canola	mitochondrion	40.13	52.07
CDY48982	Canola	mitochondrion	40.13	52.07
CDY13647	Canola	cytosol, mitochondrion, nucleus, plastid	39.49	51.24
CDX75748	Canola	cytosol, mitochondrion, nucleus	38.85	50.83
Solyc01g109240.1.1	Tomato	mitochondrion	38.85	50.41
AT3G26660.1	Thale cress	mitochondrion	38.22	49.59
AT3G26620.1	Thale cress	mitochondrion	38.22	49.59
CDX82498	Canola	cytosol, nucleus, plastid	37.58	48.76
TraesCS4D01G341500.1	Wheat	cytosol, mitochondrion, nucleus	48.41	43.93
TraesCS4B01G346500.1	Wheat	cytosol, mitochondrion, nucleus	46.5	43.45
Zm00001d034384_P001	Maize	plastid	45.22	43.29
EER93325	Sorghum	plastid	49.04	42.78
VIT_16s0100g00440.t01	Wine grape	mitochondrion	41.4	42.48
TraesCS5A01G515300.1	Wheat	cytosol	48.41	42.46
HORVU4Hr1G084750.2	Barley	cytosol, nucleus	47.77	42.37
KRH14351	Soybean	mitochondrion	38.22	41.96
TraesCS5B01G282700.1	Wheat	nucleus	50.32	41.58
HORVU5Hr1G075950.1	Barley	cytosol, nucleus	22.93	41.38
KRH59547	Soybean	mitochondrion, nucleus, plastid	37.58	41.26
Solyc06g064540.1.1	Tomato	mitochondrion, plastid	38.85	41.22
TraesCS5A01G284000.1	Wheat	nucleus	48.41	40.43
TraesCS5D01G291300.1	Wheat	nucleus	48.41	40.21
Os08t0517100-01	Rice	cytosol, nucleus, plastid	23.57	38.95
Bra025217.1-P	Field mustard	cytosol	25.48	37.38
OQU80868	Sorghum	peroxisome	43.95	34.33
Zm00001d031544_P001	Maize	plastid	43.95	33.5
TraesCS1D01G110300.1	Wheat	cytosol, mitochondrion, nucleus	43.95	32.7
GSMUA_Achr3P27340_001	Banana	mitochondrion, plastid	32.48	27.87
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	33.12	26.94
GSMUA_Achr1P01350_001	Banana	nucleus	33.76	26.37
GSMUA_Achr1P06580_001	Banana	mitochondrion	32.48	24.4
GSMUA_Achr4P25190_001	Banana	mitochondrion	31.85	23.36
GSMUA_Achr10P...	Banana	mitochondrion	31.85	22.83
GSMUA_Achr1P01360_001	Banana	mitochondrion, nucleus, plastid	30.57	22.43
GSMUA_Achr1P02520_001	Banana	cytosol, nucleus, plastid	33.76	21.9
GSMUA_Achr11P...	Banana	mitochondrion	29.3	21.8
GSMUA_AchrUn_...	Banana	mitochondrion	31.21	21.68
GSMUA_Achr5P11330_001	Banana	plastid	33.12	21.58
GSMUA_AchrUn_...	Banana	mitochondrion	31.85	21.55
GSMUA_Achr2P11240_001	Banana	plastid	31.21	20.76
GSMUA_Achr8P14330_001	Banana	mitochondrion	30.57	20.51
Bra032938.1-P	Field mustard	nucleus	38.22	20.41
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	32.48	19.84
GSMUA_Achr4P28810_001	Banana	nucleus	32.48	17.29

Protein Annotations

EnsemblPlants:GSMUA_Achr11P04980_001	EnsemblPlants:GSMUA_Achr11T04980_001	EnsemblPlantsGene:GSMUA_Achr11G04980_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF56	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000296B8C0
UniProt:M0RPH8	MapMan:15.5.24	:	:	:	:

Description

LOB domain-containing protein 24 [Source:GMGC_GENE;Acc:GSMUA_Achr11G04980_001]

Coordinates

chr11:+:3725219..3726708

Molecular Weight (calculated)

17825.3 Da

IEP (calculated)

8.058

GRAVY (calculated)

-0.345

Length

157 amino acids

Sequence
(BLAST)

001: MSNPTRCAAC RYLRRRCCED CALAPYFPSA NPHRFACVHR IFGASNVARM LQQIPVEHRR QAADAIAMEA YWRVQDPVYG SVGFISMLQR EISVVQRELA
101: ETQAQITMYA SQAQSQPNQI AAAQCLVEDG HLVPSQPPFP GLYQRDDISQ ETLRRHF

Best Arabidopsis Sequence Match ( AT3G26660.1 )
(BLAST)

001: MNPKRCAACK YLRRRCPKDC VFSPYFPPND PQKFACVHRI YGAGNVSKML QQLPDQTRAE AVESLCFEAK CRVDDPVYGC VGIIHLLKTQ IQKTQNELAK
101: TQAEIAVAQT KLSQTQNSDF M

Arabidopsis Description

LBD24LOB domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:P59468]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.