Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0517100-01 | Rice | cytosol, nucleus, plastid | 50.57 | 46.32 |
| TraesCS5B01G282700.1 | Wheat | nucleus | 79.31 | 36.32 |
| TraesCS5A01G284000.1 | Wheat | nucleus | 78.16 | 36.17 |
| TraesCS5D01G291300.1 | Wheat | nucleus | 74.71 | 34.39 |
| HORVU4Hr1G084750.2 | Barley | cytosol, nucleus | 58.62 | 28.81 |
| AT3G26660.1 | Thale cress | mitochondrion | 34.48 | 24.79 |
| Solyc01g109240.1.1 | Tomato | mitochondrion | 34.48 | 24.79 |
| AT3G26620.1 | Thale cress | mitochondrion | 34.48 | 24.79 |
| CDY28537 | Canola | mitochondrion | 33.33 | 23.97 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 32.18 | 23.93 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 32.18 | 23.33 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 32.18 | 23.14 |
| CDY48982 | Canola | mitochondrion | 32.18 | 23.14 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 32.18 | 23.14 |
| GSMUA_Achr11P... | Banana | mitochondrion | 41.38 | 22.93 |
| HORVU0Hr1G020290.1 | Barley | cytosol, plastid | 32.18 | 22.4 |
| Zm00001d031544_P001 | Maize | plastid | 51.72 | 21.84 |
| Solyc06g064540.1.1 | Tomato | mitochondrion, plastid | 36.78 | 21.62 |
| OQU80868 | Sorghum | peroxisome | 48.28 | 20.9 |
| KRH14351 | Soybean | mitochondrion | 33.33 | 20.28 |
| KRH59547 | Soybean | mitochondrion, nucleus, plastid | 31.03 | 18.88 |
| VIT_16s0100g00440.t01 | Wine grape | mitochondrion | 32.18 | 18.3 |
| HORVU4Hr1G080150.1 | Barley | plastid | 35.63 | 16.85 |
| HORVU0Hr1G017670.2 | Barley | plastid | 34.48 | 14.29 |
| HORVU3Hr1G075370.2 | Barley | nucleus | 35.63 | 13.3 |
| HORVU4Hr1G063160.1 | Barley | plastid | 37.93 | 12.89 |
| HORVU7Hr1G046690.1 | Barley | cytosol, nucleus, plastid | 32.18 | 12.28 |
| HORVU4Hr1G000880.4 | Barley | cytosol, nucleus, plastid | 29.89 | 11.56 |
| HORVU4Hr1G080160.1 | Barley | plastid | 34.48 | 10.56 |
| Bra032938.1-P | Field mustard | nucleus | 28.74 | 8.5 |
| Bra025217.1-P | Field mustard | cytosol | 10.34 | 8.41 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G075950.1 | EnsemblPlantsGene:HORVU5Hr1G075950 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31301 | PFAM:PF03195 |
| PFscan:PS50891 | SEG:seg | UniParc:UPI000B46C2DC | UniProt:A0A287RUR6 | MapMan:15.5.24 | : |
Description
No Description!
Coordinates
chrchr5H:-:548702618..548702878
Molecular Weight (calculated)
9648.3 Da
IEP (calculated)
8.329
GRAVY (calculated)
-0.729
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: TRGSIARSFT MSSTTGNEVE PEVQEEEEEE EEGGGGNPRR CAACKYLRRR CGQGCVLAPY FPASRPRRYA NVHRVFGASN VARLLQV
001: MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC
Arabidopsis Description
LBD4LOB domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHE9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.