Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 90.91 | 90.91 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 87.6 | 90.6 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 87.6 | 88.33 |
| AT3G26660.1 | Thale cress | mitochondrion | 84.3 | 84.3 |
| AT3G26620.1 | Thale cress | mitochondrion | 84.3 | 84.3 |
| CDY28537 | Canola | mitochondrion | 83.47 | 83.47 |
| CDY48982 | Canola | mitochondrion | 81.82 | 81.82 |
| Bra025217.1-P | Field mustard | cytosol | 63.64 | 71.96 |
| Solyc01g109240.1.1 | Tomato | mitochondrion | 50.41 | 50.41 |
| KRH14351 | Soybean | mitochondrion | 54.55 | 46.15 |
| VIT_16s0100g00440.t01 | Wine grape | mitochondrion | 57.02 | 45.1 |
| Solyc06g064540.1.1 | Tomato | mitochondrion, plastid | 53.72 | 43.92 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 37.19 | 43.69 |
| KRH59547 | Soybean | mitochondrion, nucleus, plastid | 49.59 | 41.96 |
| GSMUA_Achr11P... | Banana | mitochondrion | 48.76 | 37.58 |
| TraesCS4B01G346500.1 | Wheat | cytosol, mitochondrion, nucleus | 51.24 | 36.9 |
| Zm00001d034384_P001 | Maize | plastid | 49.59 | 36.59 |
| TraesCS4D01G341500.1 | Wheat | cytosol, mitochondrion, nucleus | 52.07 | 36.42 |
| TraesCS5A01G515300.1 | Wheat | cytosol | 52.89 | 35.75 |
| HORVU4Hr1G084750.2 | Barley | cytosol, nucleus | 51.24 | 35.03 |
| EER93325 | Sorghum | plastid | 50.41 | 33.89 |
| HORVU5Hr1G075950.1 | Barley | cytosol, nucleus | 23.14 | 32.18 |
| TraesCS5A01G284000.1 | Wheat | nucleus | 48.76 | 31.38 |
| TraesCS5D01G291300.1 | Wheat | nucleus | 48.76 | 31.22 |
| TraesCS5B01G282700.1 | Wheat | nucleus | 48.76 | 31.05 |
| CDY57108 | Canola | mitochondrion | 42.15 | 28.65 |
| CDY37038 | Canola | mitochondrion | 42.15 | 28.65 |
| TraesCS1D01G110300.1 | Wheat | cytosol, mitochondrion, nucleus | 47.93 | 27.49 |
| CDY00994 | Canola | plastid | 38.84 | 27.49 |
| Os08t0517100-01 | Rice | cytosol, nucleus, plastid | 21.49 | 27.37 |
| OQU80868 | Sorghum | peroxisome | 45.45 | 27.36 |
| CDY08551 | Canola | plastid | 38.84 | 27.33 |
| Zm00001d031544_P001 | Maize | plastid | 45.45 | 26.7 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 40.5 | 26.06 |
| CDY60434 | Canola | nucleus | 38.84 | 25.68 |
| CDX98901 | Canola | nucleus | 38.84 | 25.68 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 39.67 | 25.53 |
| CDY07237 | Canola | nucleus | 40.5 | 25.39 |
| CDY10793 | Canola | nucleus | 37.19 | 25.0 |
| CDY24760 | Canola | nucleus | 36.36 | 24.44 |
| CDY15375 | Canola | nucleus | 36.36 | 24.44 |
| CDY07236 | Canola | plastid | 42.15 | 22.77 |
| CDY14832 | Canola | mitochondrion, nucleus | 37.19 | 22.61 |
| CDY67746 | Canola | nucleus | 40.5 | 22.07 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 40.5 | 21.88 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 40.5 | 21.88 |
| CDX71962 | Canola | plastid | 39.67 | 21.72 |
| CDY22562 | Canola | nucleus | 42.15 | 21.43 |
| CDY06048 | Canola | plastid | 39.67 | 21.33 |
| CDY00547 | Canola | mitochondrion, nucleus | 38.02 | 21.2 |
| CDX88974 | Canola | mitochondrion, nucleus | 38.02 | 21.0 |
| CDY70198 | Canola | nucleus | 42.15 | 20.9 |
| CDY64515 | Canola | nucleus, plastid | 42.15 | 20.9 |
| CDY47969 | Canola | nucleus | 42.15 | 20.73 |
| CDY14831 | Canola | nucleus | 42.15 | 20.73 |
| CDY19098 | Canola | cytosol | 38.02 | 19.25 |
| CDY18932 | Canola | plastid | 38.84 | 18.73 |
| CDY47970 | Canola | nucleus | 38.84 | 17.8 |
| CDY68635 | Canola | nucleus | 38.02 | 17.76 |
| CDX92049 | Canola | plastid | 38.84 | 17.6 |
| CDY57109 | Canola | plastid | 37.19 | 17.31 |
| CDX74209 | Canola | plastid | 38.84 | 17.22 |
| CDY29956 | Canola | plastid | 38.84 | 17.09 |
Protein Annotations
| EnsemblPlants:CDX82498 | EnsemblPlantsGene:GSBRNA2T00137641001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF13 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDX82498 | ProteinID:CDX82498.1 | SEG:seg |
| UniParc:UPI0004EF4414 | MapMan:15.5.24 | : | : | : | : |
Description
BnaA03g33230D
Coordinates
chrLK031828:-:1589236..1589690
Molecular Weight (calculated)
13706.6 Da
IEP (calculated)
9.058
GRAVY (calculated)
-0.345
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPKRCAACK YLRRRCPKDC IFSPYFPPSD PDKFSYIHRI YGAGNVSKML QQLPVQTRAE AVESLSFEAR CRVEDPVYGC VGIISLLQTQ IQKTQTLLAK
101: TQAEIAVAQN KQSQSQISEF M
101: TQAEIAVAQN KQSQSQISEF M
001: MNPKRCAACK YLRRRCPKDC VFSPYFPPND PQKFACVHRI YGAGNVSKML QQLPDQTRAE AVESLCFEAK CRVDDPVYGC VGIIHLLKTQ IQKTQNELAK
101: TQAEIAVAQT KLSQTHISDF M
101: TQAEIAVAQT KLSQTHISDF M
Arabidopsis Description
LBD23LOB domain-containing protein 23 [Source:UniProtKB/Swiss-Prot;Acc:P59467]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.