Skip to main content
crop-pal logo
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 1
  • nucleus 3
  • mitochondrion 5
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc06g064540.1.1 Tomato mitochondrion, plastid 72.73 59.46
CDX83633 Canola cytosol, mitochondrion, nucleus, plastid 49.59 51.28
AT3G26660.1 Thale cress mitochondrion 51.24 51.24
AT3G26620.1 Thale cress mitochondrion 51.24 51.24
CDX75748 Canola cytosol, mitochondrion, nucleus 50.41 50.83
CDX82498 Canola cytosol, nucleus, plastid 50.41 50.41
CDY13647 Canola cytosol, mitochondrion, nucleus, plastid 49.59 49.59
CDY28537 Canola mitochondrion 48.76 48.76
CDY48982 Canola mitochondrion 47.93 47.93
KRH14351 Soybean mitochondrion 56.2 47.55
KRH59547 Soybean mitochondrion, nucleus, plastid 52.89 44.76
VIT_16s0100g00440.t01 Wine grape mitochondrion 56.2 44.44
GSMUA_Achr11P... Banana mitochondrion 50.41 38.85
Bra025217.1-P Field mustard cytosol 33.06 37.38
HORVU5Hr1G075950.1 Barley cytosol, nucleus 24.79 34.48
Zm00001d034384_P001 Maize plastid 43.8 32.32
EER93325 Sorghum plastid 45.45 30.56
TraesCS4B01G346500.1 Wheat cytosol, mitochondrion, nucleus 42.15 30.36
Solyc01g091400.2.1 Tomato plastid 41.32 29.94
TraesCS5A01G515300.1 Wheat cytosol 43.8 29.61
TraesCS4D01G341500.1 Wheat cytosol, mitochondrion, nucleus 42.15 29.48
HORVU4Hr1G084750.2 Barley cytosol, nucleus 41.32 28.25
TraesCS5A01G284000.1 Wheat nucleus 43.8 28.19
TraesCS5D01G291300.1 Wheat nucleus 42.98 27.51
TraesCS5B01G282700.1 Wheat nucleus 42.98 27.37
Solyc03g095940.1.1 Tomato plastid 38.02 27.06
Os08t0517100-01 Rice cytosol, nucleus, plastid 20.66 26.32
Zm00001d031544_P001 Maize plastid 44.63 26.21
OQU80868 Sorghum peroxisome 42.98 25.87
Solyc06g083930.1.1 Tomato nucleus 40.5 25.0
TraesCS1D01G110300.1 Wheat cytosol, mitochondrion, nucleus 39.67 22.75
Solyc09g066260.2.1 Tomato nucleus 42.15 22.17
Solyc01g098220.1.1 Tomato nucleus 38.84 19.5
Bra032938.1-P Field mustard nucleus 45.45 18.71
Solyc09g066270.2.1 Tomato nucleus 35.54 17.62
Solyc01g091420.1.1 Tomato plastid 38.84 17.34
Protein Annotations
EnsemblPlants:Solyc01g109240.1.1EnsemblPlantsGene:Solyc01g109240.1InterPro:IPR004883InterPro:LOBPANTHER:PTHR31301PANTHER:PTHR31301:SF13
PFAM:PF03195PFscan:PS50891UniParc:UPI0002768803UniProt:K4B3D7MapMan:15.5.24:
Description
No Description!
Coordinates
chr1:+:96243824..96244293
Molecular Weight (calculated)
14015.9 Da
IEP (calculated)
8.266
GRAVY (calculated)
-0.247
Length
121 amino acids
Sequence
(BLAST)
001: MSSTRCAACK QLRRKCPSNC IFLPYFPPNN PQRFLYVHRI YGASNVGKML QQVEEHQRGD VADSLYYEAY CRIKNPVYGC VGIITVLHEE IYHVQCQLAK
101: VQAQIDLLYQ NGLYTLDPSF Y
Best Arabidopsis Sequence Match ( AT3G26660.1 )
(BLAST)
001: MNPKRCAACK YLRRRCPKDC VFSPYFPPND PQKFACVHRI YGAGNVSKML QQLPDQTRAE AVESLCFEAK CRVDDPVYGC VGIIHLLKTQ IQKTQNELAK
101: TQAEIAVAQT KLSQTQNSDF M
Arabidopsis Description
LBD24LOB domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:P59468]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.