Factsheet for Solyc01g091420.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g091400.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00220.1	Solyc01g091400.2.1	AT4G00210.1	22822207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033253	Potato	plastid	46.13	89.93
VIT_15s0048g00830.t01	Wine grape	nucleus	69.0	74.5
GSMUA_Achr5P11330_001	Banana	plastid	60.52	68.05
GSMUA_Achr1P02520_001	Banana	cytosol, nucleus, plastid	58.3	65.29
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	60.52	63.81
GSMUA_Achr2P11240_001	Banana	plastid	54.98	63.14
AT4G00220.1	Thale cress	plastid	52.77	62.72
Bra037323.1-P	Field mustard	plastid	50.92	61.61
CDY07236	Canola	plastid	50.92	61.61
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	50.55	61.16
CDY54923	Canola	cytosol, nucleus, plastid	50.55	61.16
Zm00001d028413_P001	Maize	plastid	58.3	60.77
Zm00001d047921_P001	Maize	plastid	59.04	60.38
CDY69735	Canola	cytosol, nucleus, plastid	49.82	60.27
Os03t0246900-00	Rice	nucleus	60.89	60.0
EER92557	Sorghum	nucleus	60.15	59.06
HORVU4Hr1G063160.1	Barley	plastid	55.72	58.98
TraesCS4D01G225200.1	Wheat	nucleus	56.46	58.85
TraesCS4B01G224600.1	Wheat	plastid	56.09	58.02
TraesCS4A01G067300.1	Wheat	nucleus	56.83	57.89
Solyc01g091400.2.1	Tomato	plastid	34.32	55.69
Os10t0162600-00	Rice	nucleus	53.87	54.28
Zm00001d030364_P001	Maize	plastid	48.34	53.47
KXG38649	Sorghum	plastid	51.29	53.46
GSMUA_Achr4P28810_001	Banana	nucleus	42.44	38.98
Solyc01g109240.1.1	Tomato	mitochondrion	17.34	38.84
Solyc06g083930.1.1	Tomato	nucleus	27.68	38.27
Solyc09g066260.2.1	Tomato	nucleus	32.1	37.83
Solyc03g095940.1.1	Tomato	plastid	23.62	37.65
Solyc09g066270.2.1	Tomato	nucleus	33.21	36.89
Solyc01g098220.1.1	Tomato	nucleus	29.89	33.61
Solyc06g064540.1.1	Tomato	mitochondrion, plastid	17.71	32.43

Protein Annotations

EnsemblPlants:Solyc01g091420.1.1	EnsemblPlantsGene:Solyc01g091420.1	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529	PANTHER:PTHR31529:SF3
PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI00027681E6	UniProt:K4AZ82	MapMan:15.5.24

Description

LOB domain-containing protein 18 [Source:Projected from Arabidopsis thaliana (AT2G45420) UniProtKB/Swiss-Prot;Acc:O22131]

Coordinates

chr1:+:85049619..85054029

Molecular Weight (calculated)

28027.5 Da

IEP (calculated)

7.599

GRAVY (calculated)

-0.177

Length

271 amino acids

Sequence
(BLAST)

001: MSSNNHSSST GGVSAPGGGV TSGSTSSGGG SGGGGGGGGP CGACKFLRRK CVAGCIFAPY FDSEQGAAHF AAVHKVFGAS NVSKLLLHIP VHKRLDAVLT
101: ICFEAQARLR DPVYGCVAHI FALQHQVANL QAELSYLQAH LTTLELPTPP PLPPPPPPPP QQPQTMLHQP SLTIADLPTA GPSLPAAYDL SSLFDPMVIQ
201: PSWAMQQQPR PPPPLPLDPR HFGGARAPMD MSPSTGGGGG DLQELARELL HRHGSATVPC TESSALPPQT K

Best Arabidopsis Sequence Match ( AT4G00220.1 )
(BLAST)

001: MSSSGNPSSS SGGGGGPCGA CKFLRRKCVA GCIFAPYFDS EQGAAHFAAV HKVFGASNVS KLLHHVPEHK RPDAVVSICF EAQARLRDPI YGCVSHIVSL
101: QQQVVSLQTE LSYLQAHLAT LELPQPQPPQ VPVSSSGSLQ ALSITDLPTI SPSVYDLSSI FEPVMSSTWA MQQQPRPSDH LFGVPSSSNM GGGGELQALA
201: REFIHGGQMP AQPSPGTSGS ASSVIKRE

Arabidopsis Description

LBD30LOB domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:O81323]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.