Factsheet for Os10t0162600-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033253	Potato	plastid	35.69	69.06
VIT_15s0048g00830.t01	Wine grape	nucleus	57.99	62.15
Zm00001d030364_P001	Maize	plastid	56.51	62.04
KXG38649	Sorghum	plastid	59.11	61.15
Os03t0246900-00	Rice	nucleus	62.45	61.09
KRH76282	Soybean	plastid	52.79	57.49
KRH00577	Soybean	plastid	49.81	57.27
KRH65254	Soybean	plastid	53.16	56.97
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	46.1	55.36
Bra037323.1-P	Field mustard	plastid	46.1	55.36
CDY07236	Canola	plastid	46.1	55.36
CDY54923	Canola	cytosol, nucleus, plastid	46.1	55.36
AT4G00220.1	Thale cress	plastid	46.84	55.26
KRH40590	Soybean	plastid	47.58	55.17
Bra004910.1-P	Field mustard	plastid	51.67	54.94
CDY69735	Canola	cytosol, nucleus, plastid	45.72	54.91
CDY18932	Canola	plastid	50.93	54.58
Solyc01g091420.1.1	Tomato	plastid	54.28	53.87
CDY57109	Canola	plastid	52.04	53.85
AT2G45420.1	Thale cress	plastid	52.04	53.44
CDY68635	Canola	nucleus	50.19	52.12
Bra040311.1-P	Field mustard	nucleus	50.19	52.12
Os02t0820500-01	Rice	plastid	34.2	42.59
Os03t0149000-01	Rice	plastid	29.0	42.16
GSMUA_Achr4P28810_001	Banana	nucleus	41.26	37.63
Os08t0563400-00	Rice	mitochondrion	29.37	36.74
Os03t0149100-01	Rice	mitochondrion	34.57	35.91
Os01t0772100-01	Rice	mitochondrion	28.62	31.43
Os08t0517100-01	Rice	cytosol, nucleus, plastid	10.04	28.42

Protein Annotations

EMBL:AB200236	EnsemblPlants:Os10t0162600-00	EnsemblPlantsGene:Os10g0162600	EntrezGene:9266422	InterPro:IPR004883	InterPro:LOB
InterPro:LOB_18/20	PANTHER:PTHR31529	PANTHER:PTHR31529:SF3	PFAM:PF03195	PFscan:PS50891	PIRSF:PIRSF038127
ProteinID:AAL77143.1	ProteinID:AAP52248.1	ProteinID:BAH94766.1	ProteinID:BAT09997.1	RefSeq:XP_015613830.1	SEG:seg
UniParc:UPI000009F576	UniProt:Q7XGL4	MapMan:15.5.24	:	:	:

Description

CRL1L2Lateral organ boundaries, LOB domain containing protein. (Os10t0162600-00)

Coordinates

chr10:-:3991788..3993428

Molecular Weight (calculated)

27975.7 Da

IEP (calculated)

6.917

GRAVY (calculated)

-0.336

Length

269 amino acids

Sequence
(BLAST)

001: MSSSVVVSAS GSGSGGGGGG GGGGAGGGGG GGPCGACKFL RRKCVQGCIF APYFDSEAGA AHFAAVHKVF GASNVSKLLQ QIPAHRRLDA VVTICYEAQA
101: RLRDPVYGCV AHIFHLQHQV AGLQSELNYL QGHLSTMELP SPPPYVAGPT LAPPQPQPLM PMTAAANFNF SDLPSSSAAN IPVTADLSTL FDPLPAAQPQ
201: WGLYQQQQHH HQQLHHHPYD RMGDGSSSSR GGDDDGSDGG DLQALARELL DRHGRSSSSS KLEPPPHTQ

Best Arabidopsis Sequence Match ( AT4G00220.1 )
(BLAST)

001: MSSSGNPSSS SGGGGGPCGA CKFLRRKCVA GCIFAPYFDS EQGAAHFAAV HKVFGASNVS KLLHHVPEHK RPDAVVSICF EAQARLRDPI YGCVSHIVSL
101: QQQVVSLQTE LSYLQAHLAT LELPQPQPPQ VPVSSSGSLQ ALSITDLPTI SPSVYDLSSI FEPVMSSTWA MQQQPRPSDH LFGVPSSSNM GGGGELQALA
201: REFIHGGQMP AQPSPGTSGS ASSVIKRE

Arabidopsis Description

LBD30LOB domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:O81323]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.