Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004910.1-P | Field mustard | plastid | 97.61 | 96.84 |
| AT2G45420.1 | Thale cress | plastid | 92.43 | 88.55 |
| CDY68635 | Canola | nucleus | 87.25 | 84.56 |
| CDY57109 | Canola | plastid | 86.06 | 83.08 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 27.49 | 66.99 |
| VIT_15s0048g00830.t01 | Wine grape | nucleus | 64.54 | 64.54 |
| GSMUA_Achr5P11330_001 | Banana | plastid | 60.56 | 63.07 |
| KRH40590 | Soybean | plastid | 57.37 | 62.07 |
| KRH00577 | Soybean | plastid | 56.97 | 61.11 |
| GSMUA_Achr2P11240_001 | Banana | plastid | 57.37 | 61.02 |
| GSMUA_Achr1P02520_001 | Banana | cytosol, nucleus, plastid | 57.77 | 59.92 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 52.99 | 59.38 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 52.99 | 59.38 |
| KRH65254 | Soybean | plastid | 58.57 | 58.57 |
| CDY07236 | Canola | plastid | 52.19 | 58.48 |
| Zm00001d028413_P001 | Maize | plastid | 60.56 | 58.46 |
| Zm00001d047921_P001 | Maize | plastid | 61.35 | 58.11 |
| KRH76282 | Soybean | plastid | 56.97 | 57.89 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 58.96 | 57.59 |
| HORVU4Hr1G063160.1 | Barley | plastid | 57.77 | 56.64 |
| EER92557 | Sorghum | nucleus | 61.75 | 56.16 |
| Os03t0246900-00 | Rice | nucleus | 61.35 | 56.0 |
| TraesCS4D01G225200.1 | Wheat | nucleus | 57.77 | 55.77 |
| TraesCS4A01G067300.1 | Wheat | nucleus | 58.96 | 55.64 |
| TraesCS4B01G224600.1 | Wheat | plastid | 57.37 | 54.96 |
| Os10t0162600-00 | Rice | nucleus | 54.58 | 50.93 |
| KXG38649 | Sorghum | plastid | 52.19 | 50.38 |
| Zm00001d030364_P001 | Maize | plastid | 49.0 | 50.2 |
| CDY57108 | Canola | mitochondrion | 33.47 | 47.19 |
| CDY37038 | Canola | mitochondrion | 33.47 | 47.19 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 33.86 | 45.21 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 33.07 | 44.15 |
| CDY15375 | Canola | nucleus | 31.47 | 43.89 |
| CDY07237 | Canola | nucleus | 33.07 | 43.01 |
| CDY10793 | Canola | nucleus | 30.28 | 42.22 |
| CDY24760 | Canola | nucleus | 30.28 | 42.22 |
| CDY67746 | Canola | nucleus | 36.65 | 41.44 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 19.52 | 40.83 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 18.73 | 40.17 |
| CDX98901 | Canola | nucleus | 29.08 | 39.89 |
| CDY60434 | Canola | nucleus | 28.69 | 39.34 |
| CDY28537 | Canola | mitochondrion | 18.73 | 38.84 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 18.73 | 38.84 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 18.73 | 38.84 |
| CDY14832 | Canola | mitochondrion, nucleus | 30.28 | 38.19 |
| CDY48982 | Canola | mitochondrion | 18.33 | 38.02 |
| CDX88974 | Canola | mitochondrion, nucleus | 31.87 | 36.53 |
| CDY00547 | Canola | mitochondrion, nucleus | 31.47 | 36.41 |
| CDX71962 | Canola | plastid | 31.87 | 36.2 |
| CDY22562 | Canola | nucleus | 34.26 | 36.13 |
| CDY64515 | Canola | nucleus, plastid | 35.06 | 36.07 |
| CDY06048 | Canola | plastid | 32.27 | 36.0 |
| CDY70198 | Canola | nucleus | 34.66 | 35.66 |
| GSMUA_Achr4P28810_001 | Banana | nucleus | 41.83 | 35.59 |
| CDY47969 | Canola | nucleus | 34.66 | 35.37 |
| CDY14831 | Canola | nucleus | 34.66 | 35.37 |
| CDY19098 | Canola | cytosol | 32.67 | 34.31 |
| CDX74209 | Canola | plastid | 36.65 | 33.7 |
| CDX92049 | Canola | plastid | 35.46 | 33.33 |
| CDY29956 | Canola | plastid | 36.26 | 33.09 |
| CDY00994 | Canola | plastid | 21.91 | 32.16 |
| CDY08551 | Canola | plastid | 21.91 | 31.98 |
| CDY47970 | Canola | nucleus | 30.28 | 28.79 |
Protein Annotations
| EnsemblPlants:CDY18932 | EnsemblPlantsGene:GSBRNA2T00006140001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF3 |
| PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY18932 | ProteinID:CDY18932.1 | SEG:seg | UniParc:UPI0004EF39AD |
| UniProt:A0A078G1R3 | MapMan:15.5.24 | : | : | : | : |
Description
BnaC04g04180DBnaC04g04180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1R3]
Coordinates
chrLK032090:-:402980..405166
Molecular Weight (calculated)
25889.5 Da
IEP (calculated)
8.285
GRAVY (calculated)
-0.158
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGGNTITS VGGGGCGGGS SSGGGGSSGG GGGPCGACKF LRRKCVPGCI FAPYFDSEQG SAYFAAVHKV FGASNVSKLL LHIPVHRRAD AVVTICYEAQ
101: ARIRDPIYGC VANIFALQQQ VVNLQAEVSY LQAHLASLEL PQPQTRPPPL TQPQPLFFTP PPPLSITDLP ASVSPYDLAS IVDPPTSWAT QQRRFVDPRN
201: QYGGSSSSSS AAVGLGGGNS DLQALAHELL HRQGSPPPAA TDGSPSRSMS R
101: ARIRDPIYGC VANIFALQQQ VVNLQAEVSY LQAHLASLEL PQPQTRPPPL TQPQPLFFTP PPPLSITDLP ASVSPYDLAS IVDPPTSWAT QQRRFVDPRN
201: QYGGSSSSSS AAVGLGGGNS DLQALAHELL HRQGSPPPAA TDGSPSRSMS R
001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
Arabidopsis Description
LBD18LBD18 [Source:UniProtKB/TrEMBL;Acc:A0A178VVX7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.