CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06048	Canola	plastid	96.83	95.11
AT3G58190.1	Thale cress	plastid	87.33	88.53
CDY00547	Canola	mitochondrion, nucleus	83.71	85.25
CDX88974	Canola	mitochondrion, nucleus	84.16	84.93
CDY35378	Canola	cytosol, nucleus, plastid	32.13	68.93
CDY14832	Canola	mitochondrion, nucleus	60.18	66.83
CDY47970	Canola	nucleus	60.18	50.38
Os08t0563400-00	Rice	mitochondrion	46.61	47.91
CDY10793	Canola	nucleus	38.91	47.78
CDY24760	Canola	nucleus	38.91	47.78
CDY15375	Canola	nucleus	38.91	47.78
Zm00001d031882_P001	Maize	plastid	45.7	46.98
EES14059	Sorghum	mitochondrion	45.25	46.51
CDY60434	Canola	nucleus	35.75	43.17
CDX98901	Canola	nucleus	35.29	42.62
CDX75748	Canola	cytosol, mitochondrion, nucleus	22.62	41.67
CDX83633	Canola	cytosol, mitochondrion, nucleus, plastid	21.27	40.17
CDX82498	Canola	cytosol, nucleus, plastid	21.72	39.67
CDY13647	Canola	cytosol, mitochondrion, nucleus, plastid	21.27	38.84
CDY07237	Canola	nucleus	33.48	38.34
CDY57108	Canola	mitochondrion	30.77	38.2
CDY37038	Canola	mitochondrion	30.77	38.2
CDY19098	Canola	cytosol	40.72	37.66
CDX74738	Canola	cytosol, nucleus, plastid	31.67	37.23
CDY68561	Canola	cytosol, nucleus, plastid	31.67	37.23
CDY28537	Canola	mitochondrion	20.36	37.19
CDY64515	Canola	nucleus, plastid	40.27	36.48
CDY48982	Canola	mitochondrion	19.91	36.36
CDY14831	Canola	nucleus	39.82	35.77
CDY22562	Canola	nucleus	38.46	35.71
CDY47969	Canola	nucleus	39.37	35.37
CDY07236	Canola	plastid	35.75	35.27
CDY70198	Canola	nucleus	38.91	35.25
CDY67746	Canola	nucleus	34.84	34.68
CDY69735	Canola	cytosol, nucleus, plastid	34.39	33.93
CDY54923	Canola	cytosol, nucleus, plastid	33.94	33.48
CDY18932	Canola	plastid	36.2	31.87
CDX92049	Canola	plastid	38.01	31.46
CDY68635	Canola	nucleus	36.65	31.27
CDY57109	Canola	plastid	36.2	30.77
CDY00994	Canola	plastid	23.53	30.41
CDY08551	Canola	plastid	23.53	30.23
CDX74209	Canola	plastid	37.1	30.04
CDY29956	Canola	plastid	36.65	29.45

Protein Annotations

EnsemblPlants:CDX71962	EnsemblPlantsGene:GSBRNA2T00155725001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31529
PANTHER:PTHR31529:SF2	PFAM:PF03195	PFscan:PS50891	ProteinID:CDX71962	ProteinID:CDX71962.1	SEG:seg
UniParc:UPI0004EDCED6	MapMan:15.5.24	:	:	:	:

Description

BnaC08g29120D

Coordinates

chrLK031795:+:1530546..1531335

Molecular Weight (calculated)

24171.8 Da

IEP (calculated)

6.741

GRAVY (calculated)

-0.429

Length

221 amino acids

Sequence
(BLAST)

001: MSSSSSSSVS GSPCGACKFL RRKCAKGCVF APYFCHEQGA SHFAAIHKVF GASNASKLLS QLPTSDRCEA AITISYEAQA RLQDPIYGCV SHIFALQQQV
101: VNLQAQLEIL KQQVAQSMTF ADSPSSENPN SFYGDTTKTT SYHHDHQNIY HHHDQSHLVN QIGSLGTGQH GDATANSYPS QNSSGFGEFS IYPELEQHLN
201: AFNQDHLKEL QSANFGYISF S

Best Arabidopsis Sequence Match ( AT3G58190.1 )
(BLAST)

001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS

Arabidopsis Description

LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.