Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 5
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71962 | Canola | plastid | 88.53 | 87.33 |
| CDY06048 | Canola | plastid | 88.99 | 86.22 |
| Bra007385.1-P | Field mustard | plastid | 87.61 | 84.89 |
| CDY00547 | Canola | mitochondrion, nucleus | 84.4 | 84.79 |
| Bra014581.1-P | Field mustard | mitochondrion, nucleus | 84.86 | 84.47 |
| CDX88974 | Canola | mitochondrion, nucleus | 84.86 | 84.47 |
| AT2G42440.1 | Thale cress | mitochondrion, nucleus | 65.6 | 58.61 |
| Zm00001d031882_P001 | Maize | plastid | 49.54 | 50.23 |
| EES14059 | Sorghum | mitochondrion | 49.08 | 49.77 |
| Os08t0563400-00 | Rice | mitochondrion | 47.25 | 47.91 |
| AT2G31310.1 | Thale cress | nucleus | 41.28 | 47.87 |
| AT5G06080.1 | Thale cress | mitochondrion, nucleus | 37.61 | 46.33 |
| AT3G26620.1 | Thale cress | mitochondrion | 21.56 | 38.84 |
| AT3G26660.1 | Thale cress | mitochondrion | 21.56 | 38.84 |
| AT2G45410.1 | Thale cress | cytosol, nucleus, plastid | 33.49 | 38.22 |
| AT4G00220.1 | Thale cress | plastid | 38.99 | 37.28 |
| AT4G00210.1 | Thale cress | nucleus | 37.61 | 37.27 |
| AT2G42430.1 | Thale cress | plastid | 39.45 | 35.1 |
| AT3G11090.1 | Thale cress | mitochondrion | 24.31 | 32.12 |
| AT2G45420.1 | Thale cress | plastid | 38.53 | 32.06 |
| AT3G03760.1 | Thale cress | nucleus, plastid | 36.7 | 29.3 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:824988 | UniProt:A0A178VM67 | EMBL:AB473849 | ProteinID:AEE79752.1 | EMBL:AF447893 |
| ArrayExpress:AT3G58190 | EnsemblPlantsGene:AT3G58190 | RefSeq:AT3G58190 | TAIR:AT3G58190 | RefSeq:AT3G58190-TAIR-G | EnsemblPlants:AT3G58190.1 |
| TAIR:AT3G58190.1 | Unigene:At.27201 | EMBL:BT025282 | ProteinID:CAB68157.1 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009653 |
| GO:GO:0009791 | GO:GO:0010311 | InterPro:IPR004883 | Symbol:LBD29 | InterPro:LOB | RefSeq:NP_191378.1 |
| ProteinID:OAP06854.1 | PFAM:PF03195 | PFscan:PS50891 | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF2 | UniProt:Q9M2J7 |
| UniParc:UPI00000AB15A | SEG:seg | : | : | : | : |
Description
LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
Coordinates
chr3:-:21548484..21549572
Molecular Weight (calculated)
24057.7 Da
IEP (calculated)
6.499
GRAVY (calculated)
-0.463
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.