Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G26620.1 | Thale cress | mitochondrion | 98.35 | 98.35 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 85.12 | 85.83 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 85.12 | 85.12 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 81.82 | 84.62 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 84.3 | 84.3 |
| CDY28537 | Canola | mitochondrion | 83.47 | 83.47 |
| CDY48982 | Canola | mitochondrion | 81.82 | 81.82 |
| Bra025217.1-P | Field mustard | cytosol | 58.68 | 66.36 |
| Solyc01g109240.1.1 | Tomato | mitochondrion | 51.24 | 51.24 |
| VIT_16s0100g00440.t01 | Wine grape | mitochondrion | 58.68 | 46.41 |
| KRH14351 | Soybean | mitochondrion | 54.55 | 46.15 |
| Solyc06g064540.1.1 | Tomato | mitochondrion, plastid | 55.37 | 45.27 |
| KRH59547 | Soybean | mitochondrion, nucleus, plastid | 51.24 | 43.36 |
| GSMUA_Achr11P... | Banana | mitochondrion | 49.59 | 38.22 |
| TraesCS4B01G346500.1 | Wheat | cytosol, mitochondrion, nucleus | 51.24 | 36.9 |
| Zm00001d034384_P001 | Maize | plastid | 49.59 | 36.59 |
| TraesCS4D01G341500.1 | Wheat | cytosol, mitochondrion, nucleus | 51.24 | 35.84 |
| TraesCS5A01G515300.1 | Wheat | cytosol | 52.07 | 35.2 |
| EER93325 | Sorghum | plastid | 52.07 | 35.0 |
| HORVU5Hr1G075950.1 | Barley | cytosol, nucleus | 24.79 | 34.48 |
| HORVU4Hr1G084750.2 | Barley | cytosol, nucleus | 49.59 | 33.9 |
| TraesCS5D01G291300.1 | Wheat | nucleus | 50.41 | 32.28 |
| TraesCS5A01G284000.1 | Wheat | nucleus | 49.59 | 31.91 |
| Bra032938.1-P | Field mustard | nucleus | 76.86 | 31.63 |
| TraesCS5B01G282700.1 | Wheat | nucleus | 48.76 | 31.05 |
| Os08t0517100-01 | Rice | cytosol, nucleus, plastid | 23.97 | 30.53 |
| AT3G11090.1 | Thale cress | mitochondrion | 39.67 | 29.09 |
| AT2G45410.1 | Thale cress | cytosol, nucleus, plastid | 44.63 | 28.27 |
| OQU80868 | Sorghum | peroxisome | 46.28 | 27.86 |
| Zm00001d031544_P001 | Maize | plastid | 46.28 | 27.18 |
| TraesCS1D01G110300.1 | Wheat | cytosol, mitochondrion, nucleus | 47.11 | 27.01 |
| AT5G06080.1 | Thale cress | mitochondrion, nucleus | 38.84 | 26.55 |
| AT2G31310.1 | Thale cress | nucleus | 37.19 | 23.94 |
| AT4G00210.1 | Thale cress | nucleus | 42.15 | 23.18 |
| AT4G00220.1 | Thale cress | plastid | 41.32 | 21.93 |
| AT3G58190.1 | Thale cress | plastid | 38.84 | 21.56 |
| AT2G42430.1 | Thale cress | plastid | 40.5 | 20.0 |
| AT2G42440.1 | Thale cress | mitochondrion, nucleus | 38.84 | 19.26 |
| AT2G45420.1 | Thale cress | plastid | 39.67 | 18.32 |
| AT3G03760.1 | Thale cress | nucleus, plastid | 38.84 | 17.22 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:822278 | EMBL:AB026648 | EMBL:AB473846 | ProteinID:AEE77192.1 | ArrayExpress:AT3G26660 |
| EnsemblPlantsGene:AT3G26660 | RefSeq:AT3G26660 | TAIR:AT3G26660 | RefSeq:AT3G26660-TAIR-G | EnsemblPlants:AT3G26660.1 | TAIR:AT3G26660.1 |
| Unigene:At.53511 | ncoils:Coil | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | InterPro:IPR004883 |
| Symbol:LBD24 | InterPro:LOB | RefSeq:NP_189300.1 | UniProt:P59468 | PFAM:PF03195 | PO:PO:0009025 |
| PFscan:PS50891 | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF13 | UniParc:UPI000016355F | EMBL:X98130 | : |
Description
LBD24LOB domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:P59468]
Coordinates
chr3:-:9797129..9797620
Molecular Weight (calculated)
13684.6 Da
IEP (calculated)
8.758
GRAVY (calculated)
-0.440
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPKRCAACK YLRRRCPKDC VFSPYFPPND PQKFACVHRI YGAGNVSKML QQLPDQTRAE AVESLCFEAK CRVDDPVYGC VGIIHLLKTQ IQKTQNELAK
101: TQAEIAVAQT KLSQTQNSDF M
101: TQAEIAVAQT KLSQTQNSDF M
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.