Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48982 | Canola | mitochondrion | 97.52 | 97.52 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 82.64 | 85.47 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 85.12 | 85.12 |
| AT3G26660.1 | Thale cress | mitochondrion | 83.47 | 83.47 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 83.47 | 83.47 |
| AT3G26620.1 | Thale cress | mitochondrion | 82.64 | 82.64 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 80.17 | 80.83 |
| Solyc01g109240.1.1 | Tomato | mitochondrion | 48.76 | 48.76 |
| KRH14351 | Soybean | mitochondrion | 55.37 | 46.85 |
| Solyc06g064540.1.1 | Tomato | mitochondrion, plastid | 53.72 | 43.92 |
| VIT_16s0100g00440.t01 | Wine grape | mitochondrion | 55.37 | 43.79 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 36.36 | 42.72 |
| KRH59547 | Soybean | mitochondrion, nucleus, plastid | 50.41 | 42.66 |
| GSMUA_Achr11P... | Banana | mitochondrion | 52.07 | 40.13 |
| Bra032938.1-P | Field mustard | nucleus | 92.56 | 38.1 |
| TraesCS4D01G341500.1 | Wheat | cytosol, mitochondrion, nucleus | 51.24 | 35.84 |
| TraesCS4B01G346500.1 | Wheat | cytosol, mitochondrion, nucleus | 49.59 | 35.71 |
| Zm00001d034384_P001 | Maize | plastid | 47.11 | 34.76 |
| TraesCS5A01G515300.1 | Wheat | cytosol | 51.24 | 34.64 |
| HORVU4Hr1G084750.2 | Barley | cytosol, nucleus | 49.59 | 33.9 |
| HORVU5Hr1G075950.1 | Barley | cytosol, nucleus | 23.97 | 33.33 |
| EER93325 | Sorghum | plastid | 47.93 | 32.22 |
| Os08t0517100-01 | Rice | cytosol, nucleus, plastid | 24.79 | 31.58 |
| TraesCS5A01G284000.1 | Wheat | nucleus | 47.93 | 30.85 |
| TraesCS5D01G291300.1 | Wheat | nucleus | 47.93 | 30.69 |
| TraesCS5B01G282700.1 | Wheat | nucleus | 47.11 | 30.0 |
| CDY37038 | Canola | mitochondrion | 40.5 | 27.53 |
| CDY57108 | Canola | mitochondrion | 40.5 | 27.53 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 42.15 | 27.13 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 41.32 | 26.6 |
| TraesCS1D01G110300.1 | Wheat | cytosol, mitochondrion, nucleus | 46.28 | 26.54 |
| OQU80868 | Sorghum | peroxisome | 42.98 | 25.87 |
| CDY00994 | Canola | plastid | 36.36 | 25.73 |
| CDY08551 | Canola | plastid | 36.36 | 25.58 |
| Zm00001d031544_P001 | Maize | plastid | 42.98 | 25.24 |
| CDY07237 | Canola | nucleus | 39.67 | 24.87 |
| CDY60434 | Canola | nucleus | 37.19 | 24.59 |
| CDX98901 | Canola | nucleus | 37.19 | 24.59 |
| CDY15375 | Canola | nucleus | 34.71 | 23.33 |
| CDY10793 | Canola | nucleus | 34.71 | 23.33 |
| CDY24760 | Canola | nucleus | 33.88 | 22.78 |
| CDY14832 | Canola | mitochondrion, nucleus | 37.19 | 22.61 |
| CDY07236 | Canola | plastid | 40.5 | 21.88 |
| CDY67746 | Canola | nucleus | 39.67 | 21.62 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 39.67 | 21.43 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 39.67 | 21.43 |
| CDX71962 | Canola | plastid | 37.19 | 20.36 |
| CDY22562 | Canola | nucleus | 39.67 | 20.17 |
| CDY06048 | Canola | plastid | 37.19 | 20.0 |
| CDY00547 | Canola | mitochondrion, nucleus | 35.54 | 19.82 |
| CDX88974 | Canola | mitochondrion, nucleus | 35.54 | 19.63 |
| CDY70198 | Canola | nucleus | 38.84 | 19.26 |
| CDY64515 | Canola | nucleus, plastid | 38.84 | 19.26 |
| CDY47969 | Canola | nucleus | 38.84 | 19.11 |
| CDY14831 | Canola | nucleus | 38.84 | 19.11 |
| CDY18932 | Canola | plastid | 38.84 | 18.73 |
| CDY19098 | Canola | cytosol | 36.36 | 18.41 |
| CDY47970 | Canola | nucleus | 38.84 | 17.8 |
| CDY68635 | Canola | nucleus | 38.02 | 17.76 |
| CDY57109 | Canola | plastid | 37.19 | 17.31 |
| CDX92049 | Canola | plastid | 38.02 | 17.23 |
| CDY29956 | Canola | plastid | 38.02 | 16.73 |
| CDX74209 | Canola | plastid | 37.19 | 16.48 |
Protein Annotations
| EnsemblPlants:CDY28537 | EnsemblPlantsGene:GSBRNA2T00040461001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF13 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY28537 | ProteinID:CDY28537.1 | SEG:seg |
| UniParc:UPI0004EAE82A | UniProt:A0A078GTX3 | MapMan:15.5.24 | : | : | : |
Description
BnaC02g36230DBnaC02g36230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTX3]
Coordinates
chrLK032221:-:486948..487557
Molecular Weight (calculated)
13767.7 Da
IEP (calculated)
8.583
GRAVY (calculated)
-0.329
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPKRCAACR YLRRRCPKDC VFSPYFPPNN PEKFACVHRI YGAGNVSKML QQLPVQTRAE AVESLCFEAT CRIEDPVYGC VGMISLLQTQ IQKTESLLAR
101: TQAEITVAQI KHSQNQHSEF M
101: TQAEITVAQI KHSQNQHSEF M
001: MNPKRCAACK YLRRRCPKDC VFSPYFPPND PQKFACVHRI YGAGNVSKML QQLPDQTRAE AVESLCFEAK CRVDDPVYGC VGIIHLLKTQ IQKTQNELAK
101: TQAEIAVAQT KLSQTQNSDF M
101: TQAEIAVAQT KLSQTQNSDF M
Arabidopsis Description
LBD24LOB domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:P59468]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.