CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
extracellular 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009161.1-P	Field mustard	nucleus	98.91	98.91
CDY60434	Canola	nucleus	96.72	96.72
AT5G06080.1	Thale cress	mitochondrion, nucleus	75.96	78.53
CDY35378	Canola	cytosol, nucleus, plastid	35.52	63.11
CDX75748	Canola	cytosol, mitochondrion, nucleus	26.23	40.0
CDX83633	Canola	cytosol, mitochondrion, nucleus, plastid	25.14	39.32
VIT_13s0019g02060.t01	Wine grape	mitochondrion, nucleus	46.99	39.27
CDX82498	Canola	cytosol, nucleus, plastid	25.68	38.84
CDY15375	Canola	nucleus	37.7	38.33
CDY10793	Canola	nucleus	37.7	38.33
CDY13647	Canola	cytosol, mitochondrion, nucleus, plastid	25.14	38.02
CDY24760	Canola	nucleus	37.16	37.78
KRH73061	Soybean	mitochondrion, nucleus	45.36	37.73
CDY57108	Canola	mitochondrion	36.61	37.64
CDY37038	Canola	mitochondrion	36.61	37.64
CDY28537	Canola	mitochondrion	24.59	37.19
CDY07237	Canola	nucleus	38.8	36.79
PGSC0003DMT400097267	Potato	cytosol, mitochondrion, plastid	31.15	36.77
CDY68561	Canola	cytosol, nucleus, plastid	37.7	36.7
KRH15078	Soybean	plastid	45.9	36.36
CDY48982	Canola	mitochondrion	24.04	36.36
CDX74738	Canola	cytosol, nucleus, plastid	37.16	36.17
CDX71962	Canola	plastid	42.62	35.29
CDX88974	Canola	mitochondrion, nucleus	42.08	35.16
CDY06048	Canola	plastid	43.17	35.11
CDY00547	Canola	mitochondrion, nucleus	41.53	35.02
CDY14832	Canola	mitochondrion, nucleus	37.7	34.67
CDY67746	Canola	nucleus	38.8	31.98
CDY69735	Canola	cytosol, nucleus, plastid	38.25	31.25
CDY54923	Canola	cytosol, nucleus, plastid	37.7	30.8
CDY07236	Canola	plastid	37.7	30.8
CDY22562	Canola	nucleus	39.34	30.25
CDY64515	Canola	nucleus, plastid	39.89	29.92
CDY19098	Canola	cytosol	38.8	29.71
CDY47969	Canola	nucleus	39.89	29.67
CDY14831	Canola	nucleus	39.89	29.67
CDY70198	Canola	nucleus	39.34	29.51
CDY18932	Canola	plastid	39.89	29.08
CDY68635	Canola	nucleus	39.89	28.19
CDY00994	Canola	plastid	26.23	28.07
CDY08551	Canola	plastid	26.23	27.91
CDY57109	Canola	plastid	39.34	27.69
CDY47970	Canola	nucleus	37.7	26.14
CDX92049	Canola	plastid	36.07	24.72
CDX74209	Canola	plastid	36.07	24.18
CDY29956	Canola	plastid	36.07	24.0

Protein Annotations

EnsemblPlants:CDX98901	EnsemblPlantsGene:GSBRNA2T00107006001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529	PANTHER:PTHR31529:SF12
PFAM:PF03195	PFscan:PS50891	ProteinID:CDX98901	ProteinID:CDX98901.1	UniParc:UPI0004EDFF5C	MapMan:15.5.24

Description

BnaC09g49340D

Coordinates

chrLK031907:-:495201..496143

Molecular Weight (calculated)

20632.4 Da

IEP (calculated)

6.265

GRAVY (calculated)

-0.167

Length

183 amino acids

Sequence
(BLAST)

001: MAAHGSSCGA CKFLRRKCNI DCVFSPYFSY EQASSHFAAV HKVFGASNVS KHLLSLPLHQ RSAAAITISY EALSRMCDPV YGCVAHIFAL QQQVMTLQEE
101: IEFLGTHMAN LSNTTQSRSQ PNDMPEFLNQ MTMDTTTGFI DQTVLHNDVG INCIEGFFTN PEEVLVNHPW FQNMDHYYYA PQH

Best Arabidopsis Sequence Match ( AT5G06080.1 )
(BLAST)

001: MASHGSSCGA CKFLRRKCNR DCVFSPYFSY EQASSHFAAV HKVFGASNVS KHLLHLPQHQ RNIAAITISY EALSRMRDPV YGCVAHIFAL HQQVVTLQEE
101: IEFLGSQMKN FSYSNQNGSQ LNNIPEFVNQ MTMATTNFVD ESVLNNADGR NCYDGFFTNS EEMLVNHQWL QNMDYYY

Arabidopsis Description

LBD33LOB domain-containing protein 33 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS8]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.